Strain Fitness in Shewanella loihica PV-4 around Shew_2041
Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Dimethyl Sulfoxide 5 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,354,664 | + | Shew_2040 | 0.23 | -0.2 | |
| 2,355,244 | + | Shew_2040 | 0.79 | -0.3 | |
| 2,355,859 | - | Shew_2041 | 0.16 | -1.2 | |
| 2,356,181 | + | Shew_2041 | 0.36 | -1.7 | |
| 2,356,330 | - | Shew_2041 | 0.45 | -1.0 | |
| 2,356,583 | - | Shew_2041 | 0.60 | -1.1 | |
| 2,356,894 | - | Shew_2041 | 0.79 | -1.0 | |
| 2,356,907 | + | Shew_2041 | 0.80 | -0.2 | |
| 2,356,915 | - | Shew_2041 | 0.81 | -0.6 | |
| 2,357,535 | - | +0.1 |
Or see this region's nucleotide sequence