Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0864 and Shew_0865 are separated by 114 nucleotides Shew_0865 and Shew_0866 are separated by 197 nucleotides Shew_0866 and Shew_0867 are separated by 307 nucleotides
Shew_0864: Shew_0864 - Dyp-type peroxidase family protein (RefSeq), at 985,762 to 986,706
_0864
Shew_0865: Shew_0865 - cupin 2 domain-containing protein (RefSeq), at 986,821 to 987,279
_0865
Shew_0866: Shew_0866 - arginine repressor (RefSeq), at 987,477 to 987,947
_0866
Shew_0867: Shew_0867 - malate dehydrogenase (RefSeq), at 988,255 to 989,190
_0867
Position (kb) 987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 986.889 kb on - strand, within Shew_0865 at 986.930 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.035 kb on - strand, within Shew_0865 at 987.035 kb on - strand, within Shew_0865 at 987.078 kb on - strand, within Shew_0865 at 987.080 kb on + strand, within Shew_0865 at 987.088 kb on - strand, within Shew_0865 at 987.308 kb on + strand at 987.384 kb on - strand at 987.434 kb on - strand at 987.451 kb on + strand at 987.459 kb on - strand at 987.846 kb on - strand, within Shew_0866 at 988.750 kb on - strand, within Shew_0867
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 986,889 - Shew_0865 0.15 -0.3 986,930 + Shew_0865 0.24 +0.0 987,027 + Shew_0865 0.45 +0.2 987,027 + Shew_0865 0.45 -0.1 987,027 + Shew_0865 0.45 -0.5 987,035 - Shew_0865 0.47 -0.1 987,035 - Shew_0865 0.47 +0.6 987,078 - Shew_0865 0.56 +0.0 987,080 + Shew_0865 0.56 -0.1 987,088 - Shew_0865 0.58 -0.4 987,308 + +0.0 987,384 - +0.1 987,434 - -0.4 987,451 + +0.0 987,459 - -0.8 987,846 - Shew_0866 0.78 -2.8 988,750 - Shew_0867 0.53 +2.0
Or see this region's nucleotide sequence