Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0648 and Shew_0649 are separated by 4 nucleotides Shew_0649 and Shew_0650 overlap by 1 nucleotides Shew_0650 and Shew_0651 are separated by 74 nucleotides Shew_0651 and Shew_0652 are separated by 102 nucleotides Shew_0652 and Shew_0653 are separated by 123 nucleotides
Shew_0648: Shew_0648 - hypothetical protein (RefSeq), at 736,305 to 736,976
_0648
Shew_0649: Shew_0649 - hypothetical protein (RefSeq), at 736,981 to 737,841
_0649
Shew_0650: Shew_0650 - hypothetical protein (RefSeq), at 737,841 to 739,199
_0650
Shew_0651: Shew_0651 - hypothetical protein (RefSeq), at 739,274 to 739,582
_0651
Shew_0652: Shew_0652 - hypothetical protein (RefSeq), at 739,685 to 739,960
_0652
Shew_0653: Shew_0653 - LuxR family transcriptional regulator (RefSeq), at 740,084 to 740,704
_0653
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -1
0
1 at 736.936 kb on - strand at 736.991 kb on - strand at 737.069 kb on + strand, within Shew_0649 at 737.115 kb on - strand, within Shew_0649 at 737.205 kb on - strand, within Shew_0649 at 737.249 kb on - strand, within Shew_0649 at 737.285 kb on + strand, within Shew_0649 at 737.293 kb on - strand, within Shew_0649 at 737.322 kb on + strand, within Shew_0649 at 737.417 kb on - strand, within Shew_0649 at 737.704 kb on - strand, within Shew_0649 at 737.812 kb on - strand at 737.859 kb on + strand at 737.864 kb on + strand at 737.867 kb on - strand at 737.869 kb on + strand at 737.877 kb on - strand at 737.925 kb on - strand at 738.086 kb on + strand, within Shew_0650 at 738.787 kb on - strand, within Shew_0650 at 738.796 kb on - strand, within Shew_0650 at 739.077 kb on + strand at 739.099 kb on + strand at 739.144 kb on + strand at 739.154 kb on + strand at 739.301 kb on + strand at 739.550 kb on + strand, within Shew_0651 at 739.560 kb on + strand at 739.648 kb on - strand at 739.808 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.871 kb on + strand, within Shew_0652 at 739.879 kb on - strand, within Shew_0652 at 739.926 kb on + strand, within Shew_0652 at 739.926 kb on + strand, within Shew_0652 at 739.933 kb on - strand at 739.934 kb on - strand at 740.002 kb on - strand at 740.006 kb on + strand at 740.006 kb on + strand at 740.007 kb on + strand at 740.012 kb on + strand at 740.014 kb on - strand at 740.014 kb on - strand at 740.045 kb on - strand at 740.100 kb on - strand at 740.100 kb on - strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.108 kb on + strand at 740.113 kb on + strand at 740.113 kb on + strand at 740.121 kb on - strand at 740.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 736,936 - +0.1 736,991 - +1.0 737,069 + Shew_0649 0.10 +0.1 737,115 - Shew_0649 0.16 +0.2 737,205 - Shew_0649 0.26 +0.1 737,249 - Shew_0649 0.31 -0.2 737,285 + Shew_0649 0.35 -0.0 737,293 - Shew_0649 0.36 +0.4 737,322 + Shew_0649 0.40 +0.1 737,417 - Shew_0649 0.51 -0.1 737,704 - Shew_0649 0.84 +0.4 737,812 - +0.7 737,859 + -0.1 737,864 + +1.1 737,867 - +0.3 737,869 + +0.6 737,877 - +0.1 737,925 - +0.1 738,086 + Shew_0650 0.18 +0.8 738,787 - Shew_0650 0.70 +0.5 738,796 - Shew_0650 0.70 +0.0 739,077 + +0.1 739,099 + +0.1 739,144 + +0.1 739,154 + +0.0 739,301 + +0.8 739,550 + Shew_0651 0.89 +0.1 739,560 + +0.1 739,648 - -0.3 739,808 + Shew_0652 0.45 +0.0 739,871 + Shew_0652 0.67 +0.1 739,871 + Shew_0652 0.67 +0.2 739,871 + Shew_0652 0.67 +0.2 739,871 + Shew_0652 0.67 -0.3 739,879 - Shew_0652 0.70 -0.0 739,926 + Shew_0652 0.87 -0.5 739,926 + Shew_0652 0.87 +0.2 739,933 - +0.2 739,934 - +0.7 740,002 - -0.0 740,006 + +0.1 740,006 + +0.2 740,007 + +0.2 740,012 + -0.1 740,014 - -0.3 740,014 - +0.2 740,045 - -0.2 740,100 - +0.4 740,100 - -0.1 740,108 + +1.2 740,108 + -0.3 740,108 + +0.0 740,113 + +0.0 740,113 + +0.2 740,121 - -0.2 740,121 - +0.1
Or see this region's nucleotide sequence