Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4190 and Dshi_4191 are separated by 78 nucleotides Dshi_4191 and Dshi_4192 are separated by 92 nucleotides Dshi_4192 and Dshi_4193 overlap by 4 nucleotides
Dshi_4190: Dshi_4190 - hypothetical protein (RefSeq), at 35,941 to 37,218
_4190
Dshi_4191: Dshi_4191 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 37,297 to 38,292
_4191
Dshi_4192: Dshi_4192 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 38,385 to 38,972
_4192
Dshi_4193: Dshi_4193 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 38,969 to 40,258
_4193
Position (kb) 37
38
39 Strain fitness (log2 ratio) -1
0
1 at 36.378 kb on - strand, within Dshi_4190 at 37.013 kb on - strand, within Dshi_4190 at 37.115 kb on - strand at 37.157 kb on - strand at 37.218 kb on + strand at 37.574 kb on + strand, within Dshi_4191 at 37.676 kb on + strand, within Dshi_4191 at 37.782 kb on - strand, within Dshi_4191 at 37.898 kb on + strand, within Dshi_4191 at 38.008 kb on + strand, within Dshi_4191 at 38.041 kb on - strand, within Dshi_4191 at 38.059 kb on - strand, within Dshi_4191 at 38.066 kb on + strand, within Dshi_4191 at 38.401 kb on - strand at 38.849 kb on + strand, within Dshi_4192 at 38.849 kb on + strand, within Dshi_4192 at 38.857 kb on - strand, within Dshi_4192 at 38.898 kb on + strand, within Dshi_4192 at 39.196 kb on - strand, within Dshi_4193 at 39.257 kb on + strand, within Dshi_4193
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 36,378 - Dshi_4190 0.34 -0.2 37,013 - Dshi_4190 0.84 -0.5 37,115 - -0.5 37,157 - +0.2 37,218 + -0.1 37,574 + Dshi_4191 0.28 -1.1 37,676 + Dshi_4191 0.38 -0.5 37,782 - Dshi_4191 0.49 -0.6 37,898 + Dshi_4191 0.60 -0.7 38,008 + Dshi_4191 0.71 +0.2 38,041 - Dshi_4191 0.75 -0.5 38,059 - Dshi_4191 0.77 +0.6 38,066 + Dshi_4191 0.77 -0.5 38,401 - +0.3 38,849 + Dshi_4192 0.79 -0.5 38,849 + Dshi_4192 0.79 +0.8 38,857 - Dshi_4192 0.80 -0.1 38,898 + Dshi_4192 0.87 -0.7 39,196 - Dshi_4193 0.18 +0.1 39,257 + Dshi_4193 0.22 -0.1
Or see this region's nucleotide sequence