Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2879

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2878 and Dshi_2879 are separated by 129 nucleotidesDshi_2879 and Dshi_2880 overlap by 4 nucleotidesDshi_2880 and Dshi_2881 are separated by 59 nucleotides Dshi_2878: Dshi_2878 - succinyl-CoA synthetase, beta subunit (RefSeq), at 3,032,211 to 3,033,404 _2878 Dshi_2879: Dshi_2879 - hypothetical protein (RefSeq), at 3,033,534 to 3,034,235 _2879 Dshi_2880: Dshi_2880 - hypothetical protein (RefSeq), at 3,034,232 to 3,034,780 _2880 Dshi_2881: Dshi_2881 - hypothetical protein (RefSeq), at 3,034,840 to 3,035,316 _2881 Position (kb) 3033 3034 3035Strain fitness (log2 ratio) -1 0 1at 3033.871 kb on + strand, within Dshi_2879

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,033,871 + Dshi_2879 0.48 +0.2

Or see this region's nucleotide sequence