Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0849 and Dshi_0850 are separated by 59 nucleotides Dshi_0850 and Dshi_0851 are separated by 196 nucleotides
Dshi_0849: Dshi_0849 - 5'-Nucleotidase domain protein (RefSeq), at 858,004 to 859,593
_0849
Dshi_0850: Dshi_0850 - DEAD/DEAH box helicase domain protein (RefSeq), at 859,653 to 861,845
_0850
Dshi_0851: Dshi_0851 - protein of unknown function DUF159 (RefSeq), at 862,042 to 862,707
_0851
Position (kb) 859
860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 858.748 kb on + strand, within Dshi_0849 at 858.781 kb on - strand, within Dshi_0849 at 858.819 kb on + strand, within Dshi_0849 at 858.819 kb on + strand, within Dshi_0849 at 858.912 kb on - strand, within Dshi_0849 at 858.981 kb on + strand, within Dshi_0849 at 858.987 kb on - strand, within Dshi_0849 at 859.235 kb on + strand, within Dshi_0849 at 859.388 kb on + strand, within Dshi_0849 at 859.467 kb on - strand at 859.550 kb on + strand at 859.554 kb on + strand at 859.558 kb on - strand at 859.597 kb on + strand at 859.651 kb on - strand at 859.959 kb on + strand, within Dshi_0850 at 860.044 kb on - strand, within Dshi_0850 at 860.297 kb on - strand, within Dshi_0850 at 860.297 kb on - strand, within Dshi_0850 at 860.324 kb on + strand, within Dshi_0850 at 860.341 kb on - strand, within Dshi_0850 at 860.349 kb on - strand, within Dshi_0850 at 860.385 kb on - strand, within Dshi_0850 at 860.490 kb on - strand, within Dshi_0850 at 860.492 kb on + strand, within Dshi_0850 at 860.789 kb on - strand, within Dshi_0850 at 860.886 kb on + strand, within Dshi_0850 at 860.902 kb on - strand, within Dshi_0850 at 860.935 kb on - strand, within Dshi_0850 at 860.951 kb on - strand, within Dshi_0850 at 860.959 kb on + strand, within Dshi_0850 at 861.004 kb on - strand, within Dshi_0850 at 861.013 kb on + strand, within Dshi_0850 at 861.043 kb on + strand, within Dshi_0850 at 861.091 kb on + strand, within Dshi_0850 at 861.123 kb on - strand, within Dshi_0850 at 861.125 kb on + strand, within Dshi_0850 at 861.133 kb on - strand, within Dshi_0850 at 861.133 kb on - strand, within Dshi_0850 at 861.258 kb on + strand, within Dshi_0850 at 861.263 kb on + strand, within Dshi_0850 at 861.302 kb on + strand, within Dshi_0850 at 861.303 kb on + strand, within Dshi_0850 at 861.385 kb on + strand, within Dshi_0850 at 861.523 kb on - strand, within Dshi_0850 at 861.963 kb on + strand at 862.036 kb on + strand at 862.140 kb on + strand, within Dshi_0851 at 862.140 kb on - strand, within Dshi_0851 at 862.201 kb on - strand, within Dshi_0851 at 862.215 kb on - strand, within Dshi_0851 at 862.255 kb on + strand, within Dshi_0851 at 862.359 kb on + strand, within Dshi_0851 at 862.367 kb on - strand, within Dshi_0851 at 862.394 kb on + strand, within Dshi_0851 at 862.409 kb on - strand, within Dshi_0851 at 862.425 kb on - strand, within Dshi_0851 at 862.615 kb on + strand, within Dshi_0851
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 858,748 + Dshi_0849 0.47 -0.4 858,781 - Dshi_0849 0.49 -0.7 858,819 + Dshi_0849 0.51 -0.5 858,819 + Dshi_0849 0.51 -0.9 858,912 - Dshi_0849 0.57 +0.2 858,981 + Dshi_0849 0.61 -0.8 858,987 - Dshi_0849 0.62 -1.6 859,235 + Dshi_0849 0.77 -0.2 859,388 + Dshi_0849 0.87 -0.4 859,467 - -2.4 859,550 + +1.2 859,554 + -0.5 859,558 - -0.8 859,597 + +0.3 859,651 - +0.3 859,959 + Dshi_0850 0.14 +0.2 860,044 - Dshi_0850 0.18 +0.2 860,297 - Dshi_0850 0.29 +0.2 860,297 - Dshi_0850 0.29 -0.4 860,324 + Dshi_0850 0.31 +0.3 860,341 - Dshi_0850 0.31 +0.1 860,349 - Dshi_0850 0.32 +0.4 860,385 - Dshi_0850 0.33 +0.0 860,490 - Dshi_0850 0.38 +0.8 860,492 + Dshi_0850 0.38 -0.0 860,789 - Dshi_0850 0.52 +1.0 860,886 + Dshi_0850 0.56 -1.4 860,902 - Dshi_0850 0.57 +1.3 860,935 - Dshi_0850 0.58 +0.1 860,951 - Dshi_0850 0.59 -1.2 860,959 + Dshi_0850 0.60 +1.2 861,004 - Dshi_0850 0.62 -0.1 861,013 + Dshi_0850 0.62 +0.5 861,043 + Dshi_0850 0.63 +0.3 861,091 + Dshi_0850 0.66 +0.4 861,123 - Dshi_0850 0.67 -0.6 861,125 + Dshi_0850 0.67 -0.1 861,133 - Dshi_0850 0.67 -0.2 861,133 - Dshi_0850 0.67 +0.3 861,258 + Dshi_0850 0.73 -0.4 861,263 + Dshi_0850 0.73 +0.0 861,302 + Dshi_0850 0.75 -1.5 861,303 + Dshi_0850 0.75 -0.1 861,385 + Dshi_0850 0.79 -0.7 861,523 - Dshi_0850 0.85 +1.4 861,963 + -0.4 862,036 + -3.1 862,140 + Dshi_0851 0.15 -0.0 862,140 - Dshi_0851 0.15 -0.1 862,201 - Dshi_0851 0.24 +0.6 862,215 - Dshi_0851 0.26 +1.4 862,255 + Dshi_0851 0.32 +0.3 862,359 + Dshi_0851 0.48 +0.2 862,367 - Dshi_0851 0.49 -0.4 862,394 + Dshi_0851 0.53 +0.3 862,409 - Dshi_0851 0.55 +0.0 862,425 - Dshi_0851 0.58 -0.8 862,615 + Dshi_0851 0.86 -0.9
Or see this region's nucleotide sequence