Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0575

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0574 and Dshi_0575 are separated by 66 nucleotidesDshi_0575 and Dshi_0576 are separated by 411 nucleotides Dshi_0574: Dshi_0574 - Haemin-degrading family protein (RefSeq), at 563,756 to 564,787 _0574 Dshi_0575: Dshi_0575 - hypothetical protein (RefSeq), at 564,854 to 565,354 _0575 Dshi_0576: Dshi_0576 - transcriptional regulator, LysR family (RefSeq), at 565,766 to 566,635 _0576 Position (kb) 564 565 566Strain fitness (log2 ratio) -2 -1 0 1at 563.922 kb on + strand, within Dshi_0574at 563.927 kb on + strand, within Dshi_0574at 563.986 kb on + strand, within Dshi_0574at 564.085 kb on + strand, within Dshi_0574at 564.107 kb on - strand, within Dshi_0574at 564.186 kb on + strand, within Dshi_0574at 564.194 kb on - strand, within Dshi_0574at 564.220 kb on + strand, within Dshi_0574at 564.234 kb on - strand, within Dshi_0574at 564.298 kb on + strand, within Dshi_0574at 564.306 kb on - strand, within Dshi_0574at 564.306 kb on - strand, within Dshi_0574at 564.379 kb on + strand, within Dshi_0574at 564.387 kb on - strand, within Dshi_0574at 564.416 kb on - strand, within Dshi_0574at 564.424 kb on - strand, within Dshi_0574at 564.426 kb on + strand, within Dshi_0574at 564.426 kb on + strand, within Dshi_0574at 564.426 kb on - strand, within Dshi_0574at 564.441 kb on + strand, within Dshi_0574at 564.441 kb on + strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.449 kb on - strand, within Dshi_0574at 564.467 kb on + strand, within Dshi_0574at 564.582 kb on + strand, within Dshi_0574at 564.672 kb on + strand, within Dshi_0574at 564.680 kb on - strand, within Dshi_0574at 564.694 kb on + strandat 564.707 kb on - strandat 564.707 kb on - strandat 564.721 kb on + strandat 564.857 kb on + strandat 564.912 kb on + strand, within Dshi_0575at 564.954 kb on + strand, within Dshi_0575at 564.962 kb on - strand, within Dshi_0575at 564.967 kb on - strand, within Dshi_0575at 564.986 kb on + strand, within Dshi_0575at 565.016 kb on + strand, within Dshi_0575at 565.027 kb on + strand, within Dshi_0575at 565.029 kb on + strand, within Dshi_0575at 565.079 kb on + strand, within Dshi_0575at 565.087 kb on - strand, within Dshi_0575at 565.100 kb on + strand, within Dshi_0575at 565.100 kb on + strand, within Dshi_0575at 565.108 kb on - strand, within Dshi_0575at 565.116 kb on + strand, within Dshi_0575at 565.125 kb on - strand, within Dshi_0575at 565.150 kb on + strand, within Dshi_0575at 565.150 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.157 kb on + strand, within Dshi_0575at 565.158 kb on - strand, within Dshi_0575at 565.190 kb on + strand, within Dshi_0575at 565.190 kb on + strand, within Dshi_0575at 565.198 kb on - strand, within Dshi_0575at 565.198 kb on - strand, within Dshi_0575at 565.260 kb on - strand, within Dshi_0575at 565.261 kb on + strand, within Dshi_0575at 565.269 kb on - strand, within Dshi_0575at 565.385 kb on + strandat 565.393 kb on - strandat 565.412 kb on - strandat 565.422 kb on - strandat 565.437 kb on - strandat 565.491 kb on - strandat 565.499 kb on - strandat 565.506 kb on + strandat 565.521 kb on - strandat 565.523 kb on + strandat 565.531 kb on - strandat 565.531 kb on - strandat 565.571 kb on + strandat 565.571 kb on + strandat 565.584 kb on - strandat 565.587 kb on + strandat 565.587 kb on + strandat 565.587 kb on + strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.595 kb on - strandat 565.618 kb on - strandat 565.618 kb on - strandat 565.627 kb on + strandat 565.635 kb on - strandat 565.635 kb on - strandat 565.635 kb on - strandat 565.642 kb on - strandat 565.677 kb on - strandat 565.687 kb on - strandat 565.701 kb on + strandat 565.764 kb on - strandat 565.823 kb on - strandat 565.848 kb on - strandat 565.849 kb on + strandat 565.869 kb on - strand, within Dshi_0576at 565.882 kb on - strand, within Dshi_0576at 565.884 kb on + strand, within Dshi_0576at 565.892 kb on - strand, within Dshi_0576at 565.913 kb on - strand, within Dshi_0576at 565.949 kb on + strand, within Dshi_0576at 565.983 kb on - strand, within Dshi_0576at 565.983 kb on - strand, within Dshi_0576at 565.992 kb on + strand, within Dshi_0576at 566.015 kb on - strand, within Dshi_0576at 566.079 kb on + strand, within Dshi_0576at 566.091 kb on + strand, within Dshi_0576at 566.099 kb on - strand, within Dshi_0576at 566.099 kb on - strand, within Dshi_0576at 566.099 kb on - strand, within Dshi_0576at 566.108 kb on + strand, within Dshi_0576at 566.108 kb on + strand, within Dshi_0576at 566.116 kb on - strand, within Dshi_0576at 566.127 kb on + strand, within Dshi_0576at 566.128 kb on - strand, within Dshi_0576at 566.145 kb on - strand, within Dshi_0576at 566.177 kb on + strand, within Dshi_0576at 566.224 kb on + strand, within Dshi_0576at 566.228 kb on - strand, within Dshi_0576at 566.279 kb on + strand, within Dshi_0576at 566.287 kb on - strand, within Dshi_0576at 566.349 kb on + strand, within Dshi_0576

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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563,922 + Dshi_0574 0.16 -1.1
563,927 + Dshi_0574 0.17 -2.5
563,986 + Dshi_0574 0.22 +0.2
564,085 + Dshi_0574 0.32 -1.4
564,107 - Dshi_0574 0.34 -0.4
564,186 + Dshi_0574 0.42 -1.4
564,194 - Dshi_0574 0.42 -0.8
564,220 + Dshi_0574 0.45 +0.1
564,234 - Dshi_0574 0.46 -0.5
564,298 + Dshi_0574 0.53 -1.6
564,306 - Dshi_0574 0.53 -1.3
564,306 - Dshi_0574 0.53 -0.4
564,379 + Dshi_0574 0.60 -0.3
564,387 - Dshi_0574 0.61 -1.3
564,416 - Dshi_0574 0.64 +0.1
564,424 - Dshi_0574 0.65 -1.6
564,426 + Dshi_0574 0.65 +0.6
564,426 + Dshi_0574 0.65 -2.5
564,426 - Dshi_0574 0.65 -1.2
564,441 + Dshi_0574 0.66 -0.3
564,441 + Dshi_0574 0.66 -0.2
564,449 - Dshi_0574 0.67 -0.6
564,449 - Dshi_0574 0.67 -2.2
564,449 - Dshi_0574 0.67 -0.8
564,449 - Dshi_0574 0.67 -0.9
564,449 - Dshi_0574 0.67 -1.7
564,449 - Dshi_0574 0.67 -1.2
564,467 + Dshi_0574 0.69 -0.1
564,582 + Dshi_0574 0.80 -1.5
564,672 + Dshi_0574 0.89 -0.4
564,680 - Dshi_0574 0.90 -1.0
564,694 + -0.7
564,707 - -0.6
564,707 - -0.8
564,721 + -1.1
564,857 + -1.5
564,912 + Dshi_0575 0.12 -0.8
564,954 + Dshi_0575 0.20 +0.2
564,962 - Dshi_0575 0.22 -0.8
564,967 - Dshi_0575 0.23 -0.7
564,986 + Dshi_0575 0.26 -0.3
565,016 + Dshi_0575 0.32 -1.3
565,027 + Dshi_0575 0.35 -0.3
565,029 + Dshi_0575 0.35 -0.5
565,079 + Dshi_0575 0.45 +0.1
565,087 - Dshi_0575 0.47 -1.8
565,100 + Dshi_0575 0.49 +0.5
565,100 + Dshi_0575 0.49 -1.9
565,108 - Dshi_0575 0.51 -0.8
565,116 + Dshi_0575 0.52 +0.3
565,125 - Dshi_0575 0.54 -0.9
565,150 + Dshi_0575 0.59 -1.0
565,150 + Dshi_0575 0.59 +0.5
565,157 + Dshi_0575 0.60 +0.1
565,157 + Dshi_0575 0.60 +0.2
565,157 + Dshi_0575 0.60 -1.6
565,157 + Dshi_0575 0.60 +0.4
565,157 + Dshi_0575 0.60 +0.8
565,158 - Dshi_0575 0.61 -1.8
565,190 + Dshi_0575 0.67 -0.3
565,190 + Dshi_0575 0.67 -0.8
565,198 - Dshi_0575 0.69 -0.1
565,198 - Dshi_0575 0.69 -0.1
565,260 - Dshi_0575 0.81 -0.9
565,261 + Dshi_0575 0.81 -1.4
565,269 - Dshi_0575 0.83 -1.9
565,385 + -1.2
565,393 - -1.0
565,412 - -0.6
565,422 - +0.2
565,437 - -0.6
565,491 - -0.5
565,499 - +0.2
565,506 + -1.8
565,521 - -1.5
565,523 + -0.1
565,531 - -0.1
565,531 - -1.1
565,571 + -0.7
565,571 + -1.8
565,584 - +1.6
565,587 + -0.6
565,587 + +0.1
565,587 + +1.7
565,595 - -0.8
565,595 - +0.6
565,595 - -0.8
565,595 - -0.4
565,595 - -0.2
565,595 - -2.2
565,618 - +0.4
565,618 - -0.1
565,627 + -0.5
565,635 - -0.4
565,635 - +0.3
565,635 - -1.3
565,642 - +0.1
565,677 - -0.9
565,687 - +1.2
565,701 + -0.6
565,764 - +0.5
565,823 - -0.3
565,848 - -0.4
565,849 + +0.7
565,869 - Dshi_0576 0.12 -0.3
565,882 - Dshi_0576 0.13 -0.5
565,884 + Dshi_0576 0.14 -0.2
565,892 - Dshi_0576 0.14 -0.8
565,913 - Dshi_0576 0.17 -0.5
565,949 + Dshi_0576 0.21 -1.1
565,983 - Dshi_0576 0.25 -0.5
565,983 - Dshi_0576 0.25 -0.6
565,992 + Dshi_0576 0.26 +1.6
566,015 - Dshi_0576 0.29 -1.6
566,079 + Dshi_0576 0.36 -0.2
566,091 + Dshi_0576 0.37 -0.1
566,099 - Dshi_0576 0.38 -0.2
566,099 - Dshi_0576 0.38 -0.2
566,099 - Dshi_0576 0.38 -1.0
566,108 + Dshi_0576 0.39 -0.3
566,108 + Dshi_0576 0.39 -0.1
566,116 - Dshi_0576 0.40 -0.2
566,127 + Dshi_0576 0.41 -0.1
566,128 - Dshi_0576 0.42 -0.5
566,145 - Dshi_0576 0.44 +0.5
566,177 + Dshi_0576 0.47 -0.9
566,224 + Dshi_0576 0.53 +0.2
566,228 - Dshi_0576 0.53 -0.9
566,279 + Dshi_0576 0.59 +0.1
566,287 - Dshi_0576 0.60 -1.0
566,349 + Dshi_0576 0.67 -1.0

Or see this region's nucleotide sequence