Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0551

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0550 and Dshi_0551 are separated by 19 nucleotidesDshi_0551 and Dshi_0552 overlap by 4 nucleotidesDshi_0552 and Dshi_0553 are separated by 3 nucleotides Dshi_0550: Dshi_0550 - transcriptional regulator, DeoR family (RefSeq), at 537,246 to 538,217 _0550 Dshi_0551: Dshi_0551 - D-xylulose reductase (EC 1.1.1.9) (from data), at 538,237 to 539,280 _0551 Dshi_0552: Dshi_0552 - sugar isomerase (SIS) (RefSeq), at 539,277 to 539,843 _0552 Dshi_0553: Dshi_0553 - short-chain dehydrogenase/reductase SDR (RefSeq), at 539,847 to 540,614 _0553 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.275 kb on - strandat 537.327 kb on + strandat 537.382 kb on + strand, within Dshi_0550at 537.399 kb on + strand, within Dshi_0550at 537.438 kb on + strand, within Dshi_0550at 537.481 kb on + strand, within Dshi_0550at 537.481 kb on + strand, within Dshi_0550at 537.487 kb on + strand, within Dshi_0550at 537.495 kb on - strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.550 kb on + strand, within Dshi_0550at 537.553 kb on - strand, within Dshi_0550at 537.558 kb on - strand, within Dshi_0550at 537.563 kb on - strand, within Dshi_0550at 537.569 kb on + strand, within Dshi_0550at 537.569 kb on + strand, within Dshi_0550at 537.575 kb on - strand, within Dshi_0550at 537.657 kb on + strand, within Dshi_0550at 537.672 kb on + strand, within Dshi_0550at 537.680 kb on - strand, within Dshi_0550at 537.680 kb on - strand, within Dshi_0550at 537.712 kb on + strand, within Dshi_0550at 537.748 kb on + strand, within Dshi_0550at 537.791 kb on + strand, within Dshi_0550at 537.791 kb on + strand, within Dshi_0550at 537.798 kb on - strand, within Dshi_0550at 537.836 kb on + strand, within Dshi_0550at 537.845 kb on - strand, within Dshi_0550at 537.921 kb on - strand, within Dshi_0550at 537.929 kb on - strand, within Dshi_0550at 537.952 kb on - strand, within Dshi_0550at 537.967 kb on + strand, within Dshi_0550at 537.975 kb on - strand, within Dshi_0550at 537.976 kb on + strand, within Dshi_0550at 537.977 kb on + strand, within Dshi_0550at 537.977 kb on + strand, within Dshi_0550at 537.979 kb on - strand, within Dshi_0550at 537.983 kb on + strand, within Dshi_0550at 537.984 kb on - strand, within Dshi_0550at 538.002 kb on - strand, within Dshi_0550at 538.135 kb on - strandat 538.137 kb on + strandat 538.137 kb on + strandat 538.174 kb on - strandat 538.186 kb on - strandat 538.229 kb on - strandat 538.234 kb on + strandat 538.242 kb on - strandat 538.305 kb on + strandat 538.310 kb on + strandat 538.310 kb on + strandat 538.350 kb on - strand, within Dshi_0551at 538.368 kb on + strand, within Dshi_0551at 538.376 kb on - strand, within Dshi_0551at 538.378 kb on - strand, within Dshi_0551at 538.476 kb on + strand, within Dshi_0551at 538.494 kb on + strand, within Dshi_0551at 538.523 kb on + strand, within Dshi_0551at 538.532 kb on + strand, within Dshi_0551at 538.572 kb on + strand, within Dshi_0551at 538.572 kb on + strand, within Dshi_0551at 538.581 kb on + strand, within Dshi_0551at 538.585 kb on - strand, within Dshi_0551at 538.591 kb on + strand, within Dshi_0551at 538.613 kb on + strand, within Dshi_0551at 538.618 kb on - strand, within Dshi_0551at 538.637 kb on + strand, within Dshi_0551at 538.688 kb on - strand, within Dshi_0551at 538.757 kb on + strand, within Dshi_0551at 538.882 kb on + strand, within Dshi_0551at 538.940 kb on - strand, within Dshi_0551at 539.118 kb on + strand, within Dshi_0551at 539.127 kb on - strand, within Dshi_0551at 539.231 kb on + strandat 539.357 kb on + strand, within Dshi_0552at 539.432 kb on - strand, within Dshi_0552at 539.625 kb on - strand, within Dshi_0552at 539.678 kb on + strand, within Dshi_0552at 539.681 kb on - strand, within Dshi_0552at 539.700 kb on + strand, within Dshi_0552at 539.708 kb on - strand, within Dshi_0552at 539.708 kb on - strand, within Dshi_0552at 539.710 kb on + strand, within Dshi_0552at 539.710 kb on + strand, within Dshi_0552at 539.742 kb on + strand, within Dshi_0552at 539.750 kb on - strand, within Dshi_0552at 539.796 kb on - strandat 539.796 kb on - strandat 539.796 kb on - strandat 539.798 kb on + strandat 539.812 kb on - strandat 539.813 kb on - strandat 539.833 kb on + strandat 539.876 kb on + strandat 539.876 kb on + strandat 539.884 kb on - strandat 539.926 kb on + strand, within Dshi_0553at 539.928 kb on + strand, within Dshi_0553at 539.970 kb on + strand, within Dshi_0553at 539.971 kb on + strand, within Dshi_0553at 539.976 kb on + strand, within Dshi_0553at 539.976 kb on + strand, within Dshi_0553at 539.979 kb on - strand, within Dshi_0553at 539.984 kb on - strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.008 kb on + strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.016 kb on - strand, within Dshi_0553at 540.043 kb on + strand, within Dshi_0553at 540.091 kb on - strand, within Dshi_0553at 540.092 kb on - strand, within Dshi_0553at 540.092 kb on - strand, within Dshi_0553at 540.141 kb on + strand, within Dshi_0553at 540.141 kb on + strand, within Dshi_0553at 540.144 kb on - strand, within Dshi_0553at 540.149 kb on - strand, within Dshi_0553at 540.196 kb on + strand, within Dshi_0553at 540.204 kb on - strand, within Dshi_0553at 540.222 kb on - strand, within Dshi_0553at 540.224 kb on + strand, within Dshi_0553at 540.224 kb on + strand, within Dshi_0553at 540.232 kb on - strand, within Dshi_0553at 540.247 kb on - strand, within Dshi_0553at 540.271 kb on - strand, within Dshi_0553

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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537,275 - -0.7
537,327 + -1.1
537,382 + Dshi_0550 0.14 -0.6
537,399 + Dshi_0550 0.16 +0.7
537,438 + Dshi_0550 0.20 +0.3
537,481 + Dshi_0550 0.24 +0.8
537,481 + Dshi_0550 0.24 +0.1
537,487 + Dshi_0550 0.25 +0.1
537,495 - Dshi_0550 0.26 +0.8
537,550 + Dshi_0550 0.31 +2.8
537,550 + Dshi_0550 0.31 -0.1
537,550 + Dshi_0550 0.31 +0.8
537,550 + Dshi_0550 0.31 -1.4
537,550 + Dshi_0550 0.31 +0.5
537,550 + Dshi_0550 0.31 +0.3
537,553 - Dshi_0550 0.32 +0.7
537,558 - Dshi_0550 0.32 +1.3
537,563 - Dshi_0550 0.33 +0.3
537,569 + Dshi_0550 0.33 +1.3
537,569 + Dshi_0550 0.33 -0.8
537,575 - Dshi_0550 0.34 +1.3
537,657 + Dshi_0550 0.42 -0.2
537,672 + Dshi_0550 0.44 -1.9
537,680 - Dshi_0550 0.45 +1.5
537,680 - Dshi_0550 0.45 +0.1
537,712 + Dshi_0550 0.48 -0.2
537,748 + Dshi_0550 0.52 +2.1
537,791 + Dshi_0550 0.56 +0.8
537,791 + Dshi_0550 0.56 -0.8
537,798 - Dshi_0550 0.57 +0.8
537,836 + Dshi_0550 0.61 +0.4
537,845 - Dshi_0550 0.62 -0.1
537,921 - Dshi_0550 0.69 +1.0
537,929 - Dshi_0550 0.70 -0.1
537,952 - Dshi_0550 0.73 -0.8
537,967 + Dshi_0550 0.74 -0.0
537,975 - Dshi_0550 0.75 +0.3
537,976 + Dshi_0550 0.75 -0.6
537,977 + Dshi_0550 0.75 +1.1
537,977 + Dshi_0550 0.75 +0.4
537,979 - Dshi_0550 0.75 -0.6
537,983 + Dshi_0550 0.76 -0.3
537,984 - Dshi_0550 0.76 +0.3
538,002 - Dshi_0550 0.78 +1.3
538,135 - -0.2
538,137 + +0.4
538,137 + -0.1
538,174 - +0.3
538,186 - -0.2
538,229 - +0.6
538,234 + +0.8
538,242 - +0.1
538,305 + -0.3
538,310 + +0.1
538,310 + +0.2
538,350 - Dshi_0551 0.11 -0.3
538,368 + Dshi_0551 0.13 +1.5
538,376 - Dshi_0551 0.13 +0.3
538,378 - Dshi_0551 0.14 +0.0
538,476 + Dshi_0551 0.23 +0.5
538,494 + Dshi_0551 0.25 +1.4
538,523 + Dshi_0551 0.27 -1.2
538,532 + Dshi_0551 0.28 -0.5
538,572 + Dshi_0551 0.32 +0.1
538,572 + Dshi_0551 0.32 +0.1
538,581 + Dshi_0551 0.33 +0.5
538,585 - Dshi_0551 0.33 -0.1
538,591 + Dshi_0551 0.34 +0.4
538,613 + Dshi_0551 0.36 +0.0
538,618 - Dshi_0551 0.36 -0.4
538,637 + Dshi_0551 0.38 -0.9
538,688 - Dshi_0551 0.43 +0.1
538,757 + Dshi_0551 0.50 -0.1
538,882 + Dshi_0551 0.62 +0.3
538,940 - Dshi_0551 0.67 -0.3
539,118 + Dshi_0551 0.84 -1.6
539,127 - Dshi_0551 0.85 +1.9
539,231 + +0.3
539,357 + Dshi_0552 0.14 -0.7
539,432 - Dshi_0552 0.27 +0.4
539,625 - Dshi_0552 0.61 -0.3
539,678 + Dshi_0552 0.71 +0.1
539,681 - Dshi_0552 0.71 -0.1
539,700 + Dshi_0552 0.75 +1.6
539,708 - Dshi_0552 0.76 +0.4
539,708 - Dshi_0552 0.76 -0.1
539,710 + Dshi_0552 0.76 +0.2
539,710 + Dshi_0552 0.76 +0.3
539,742 + Dshi_0552 0.82 -0.1
539,750 - Dshi_0552 0.83 -0.1
539,796 - +0.4
539,796 - +0.2
539,796 - -0.7
539,798 + +1.1
539,812 - -0.2
539,813 - +1.3
539,833 + -0.1
539,876 + +0.1
539,876 + +0.3
539,884 - -0.5
539,926 + Dshi_0553 0.10 +0.7
539,928 + Dshi_0553 0.11 +0.2
539,970 + Dshi_0553 0.16 -0.9
539,971 + Dshi_0553 0.16 -1.3
539,976 + Dshi_0553 0.17 +0.3
539,976 + Dshi_0553 0.17 +0.2
539,979 - Dshi_0553 0.17 -0.3
539,984 - Dshi_0553 0.18 -1.2
540,008 + Dshi_0553 0.21 -1.1
540,008 + Dshi_0553 0.21 -0.1
540,008 + Dshi_0553 0.21 +0.3
540,008 + Dshi_0553 0.21 +0.7
540,008 + Dshi_0553 0.21 +0.3
540,008 + Dshi_0553 0.21 +0.3
540,008 + Dshi_0553 0.21 -0.1
540,008 + Dshi_0553 0.21 +1.1
540,008 + Dshi_0553 0.21 -0.7
540,008 + Dshi_0553 0.21 -1.1
540,008 + Dshi_0553 0.21 -0.7
540,008 + Dshi_0553 0.21 +0.7
540,016 - Dshi_0553 0.22 +0.7
540,016 - Dshi_0553 0.22 -0.1
540,016 - Dshi_0553 0.22 -0.4
540,016 - Dshi_0553 0.22 +0.2
540,016 - Dshi_0553 0.22 +0.5
540,016 - Dshi_0553 0.22 +0.6
540,016 - Dshi_0553 0.22 -0.1
540,043 + Dshi_0553 0.26 +0.8
540,091 - Dshi_0553 0.32 +1.5
540,092 - Dshi_0553 0.32 +1.3
540,092 - Dshi_0553 0.32 -0.5
540,141 + Dshi_0553 0.38 +0.1
540,141 + Dshi_0553 0.38 +0.7
540,144 - Dshi_0553 0.39 -0.4
540,149 - Dshi_0553 0.39 -0.3
540,196 + Dshi_0553 0.45 +1.3
540,204 - Dshi_0553 0.46 +0.1
540,222 - Dshi_0553 0.49 -0.4
540,224 + Dshi_0553 0.49 +0.4
540,224 + Dshi_0553 0.49 -0.1
540,232 - Dshi_0553 0.50 -1.1
540,247 - Dshi_0553 0.52 -0.5
540,271 - Dshi_0553 0.55 -0.2

Or see this region's nucleotide sequence