Strain Fitness in Sinorhizobium meliloti 1021 around SMc02723

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02721 and SMc02722 overlap by 1173 nucleotidesSMc02722 and SMc02723 are separated by 31 nucleotidesSMc02723 and SMc02724 overlap by 4 nucleotides SMc02721: SMc02721 - outer membrane receptor protein, at 2,569,478 to 2,572,276 SMc02721 SMc02722: SMc02722 - aminoglycoside 3'-phosphotransferase, at 2,571,104 to 2,572,015 SMc02722 SMc02723: SMc02723 - 7-cyano-7-deazaguanine reductase, at 2,572,047 to 2,572,511 SMc02723 SMc02724: SMc02724 - hypothetical protein, at 2,572,508 to 2,573,428 SMc02724 Position (kb) 2572 2573Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2571.114 kb on - strandat 2571.131 kb on + strandat 2571.162 kb on + strandat 2571.162 kb on + strandat 2571.162 kb on + strandat 2571.163 kb on - strandat 2571.180 kb on - strandat 2571.180 kb on - strandat 2571.180 kb on - strandat 2571.305 kb on - strandat 2571.344 kb on + strandat 2571.344 kb on + strandat 2571.345 kb on - strandat 2571.345 kb on - strandat 2571.350 kb on + strandat 2571.351 kb on - strandat 2571.351 kb on - strandat 2571.464 kb on + strandat 2572.153 kb on + strandat 2572.160 kb on - strandat 2572.312 kb on + strand, within SMc02723at 2572.312 kb on + strand, within SMc02723at 2572.313 kb on - strandat 2572.313 kb on - strand, within SMc02723at 2572.323 kb on + strand, within SMc02723at 2572.323 kb on + strand, within SMc02723at 2572.323 kb on + strand, within SMc02723at 2572.324 kb on - strand, within SMc02723at 2572.324 kb on - strand, within SMc02723at 2572.325 kb on + strand, within SMc02723at 2572.325 kb on + strand, within SMc02723at 2572.325 kb on + strand, within SMc02723at 2572.326 kb on - strand, within SMc02723at 2572.326 kb on - strand, within SMc02723at 2572.326 kb on - strand, within SMc02723at 2572.383 kb on - strand, within SMc02723at 2573.031 kb on + strand, within SMc02724at 2573.032 kb on - strand, within SMc02724at 2573.102 kb on + strand, within SMc02724at 2573.102 kb on + strand, within SMc02724at 2573.191 kb on - strand, within SMc02724at 2573.245 kb on - strand, within SMc02724at 2573.350 kb on + strandat 2573.351 kb on - strandat 2573.351 kb on - strandat 2573.410 kb on + strandat 2573.411 kb on - strandat 2573.411 kb on - strandat 2573.411 kb on - strandat 2573.411 kb on - strandat 2573.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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2,571,114 - +1.8
2,571,131 + +0.1
2,571,162 + -0.4
2,571,162 + +1.4
2,571,162 + +0.5
2,571,163 - -0.8
2,571,180 - -1.5
2,571,180 - -0.2
2,571,180 - +1.3
2,571,305 - +0.6
2,571,344 + +0.3
2,571,344 + -0.4
2,571,345 - +0.6
2,571,345 - -0.5
2,571,350 + -0.2
2,571,351 - -0.6
2,571,351 - +0.2
2,571,464 + -0.4
2,572,153 + +1.2
2,572,160 - +2.6
2,572,312 + SMc02723 0.57 +0.2
2,572,312 + SMc02723 0.57 -0.2
2,572,313 - -1.8
2,572,313 - SMc02723 0.57 -0.8
2,572,323 + SMc02723 0.59 -0.7
2,572,323 + SMc02723 0.59 +0.4
2,572,323 + SMc02723 0.59 +0.1
2,572,324 - SMc02723 0.60 -0.9
2,572,324 - SMc02723 0.60 -0.9
2,572,325 + SMc02723 0.60 -1.2
2,572,325 + SMc02723 0.60 +0.1
2,572,325 + SMc02723 0.60 +0.2
2,572,326 - SMc02723 0.60 -4.0
2,572,326 - SMc02723 0.60 +0.4
2,572,326 - SMc02723 0.60 -0.0
2,572,383 - SMc02723 0.72 -1.3
2,573,031 + SMc02724 0.57 -2.4
2,573,032 - SMc02724 0.57 -1.9
2,573,102 + SMc02724 0.64 -2.2
2,573,102 + SMc02724 0.64 -1.5
2,573,191 - SMc02724 0.74 -2.2
2,573,245 - SMc02724 0.80 -0.4
2,573,350 + -0.8
2,573,351 - -2.9
2,573,351 - -1.2
2,573,410 + +0.8
2,573,411 - +0.8
2,573,411 - -1.7
2,573,411 - -1.5
2,573,411 - -0.5
2,573,431 - -0.3

Or see this region's nucleotide sequence