Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02695 and SMc02696 are separated by 472 nucleotides SMc02696 and SMc02697 overlap by 4 nucleotides SMc02697 and SMc02698 are separated by 45 nucleotides SMc02698 and SMc02699 are separated by 174 nucleotides SMc02699 and SMc02700 are separated by 18 nucleotides
SMc02695: SMc02695 - GTP-dependent nucleic acid-binding protein EngD, at 2,544,576 to 2,545,679
SMc02695
SMc02696: SMc02696 - hypothetical protein, at 2,546,152 to 2,546,607
SMc02696
SMc02697: SMc02697 - hypothetical protein, at 2,546,604 to 2,547,074
SMc02697
SMc02698: SMc02698 - adenine phosphoribosyltransferase, at 2,547,120 to 2,547,662
SMc02698
SMc02699: SMc02699 - hypothetical protein, at 2,547,837 to 2,548,022
SMc02699
SMc02700: SMc02700 - hypothetical protein, at 2,548,041 to 2,549,300
SMc02700
Position (kb)
2546
2547
2548 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2545.633 kb on - strand at 2545.673 kb on + strand at 2545.673 kb on + strand at 2545.674 kb on - strand at 2545.674 kb on - strand at 2545.677 kb on + strand at 2545.677 kb on + strand at 2545.677 kb on + strand at 2545.677 kb on + strand at 2545.678 kb on - strand at 2545.903 kb on + strand at 2545.937 kb on + strand at 2545.937 kb on + strand at 2545.937 kb on + strand at 2545.938 kb on - strand at 2545.938 kb on - strand at 2545.938 kb on - strand at 2546.092 kb on + strand at 2546.093 kb on - strand at 2546.109 kb on + strand at 2546.158 kb on + strand at 2546.259 kb on + strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.260 kb on - strand, within SMc02696 at 2546.439 kb on + strand, within SMc02696 at 2546.440 kb on - strand, within SMc02696 at 2546.559 kb on - strand, within SMc02696 at 2546.625 kb on + strand at 2546.626 kb on - strand at 2546.950 kb on + strand, within SMc02697 at 2546.950 kb on + strand, within SMc02697 at 2547.100 kb on + strand at 2547.100 kb on + strand at 2547.105 kb on + strand at 2547.106 kb on - strand at 2547.106 kb on - strand at 2547.136 kb on + strand at 2547.423 kb on + strand, within SMc02698 at 2547.423 kb on + strand, within SMc02698 at 2547.468 kb on - strand, within SMc02698 at 2547.468 kb on - strand, within SMc02698 at 2547.517 kb on + strand, within SMc02698 at 2547.705 kb on + strand at 2547.705 kb on + strand at 2547.705 kb on + strand at 2547.705 kb on + strand at 2547.706 kb on - strand at 2547.706 kb on - strand at 2547.706 kb on - strand at 2547.706 kb on - strand at 2547.706 kb on - strand at 2547.789 kb on + strand at 2547.820 kb on + strand at 2547.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 2,545,633 - -1.8 2,545,673 + -0.4 2,545,673 + -0.9 2,545,674 - -0.5 2,545,674 - +0.4 2,545,677 + +0.1 2,545,677 + -0.8 2,545,677 + +0.6 2,545,677 + -1.3 2,545,678 - -0.4 2,545,903 + -0.5 2,545,937 + +0.1 2,545,937 + -0.1 2,545,937 + -0.9 2,545,938 - -0.8 2,545,938 - -0.0 2,545,938 - -0.5 2,546,092 + -0.6 2,546,093 - +0.6 2,546,109 + +0.0 2,546,158 + +0.5 2,546,259 + SMc02696 0.23 +0.6 2,546,260 - SMc02696 0.24 -1.8 2,546,260 - SMc02696 0.24 -1.4 2,546,260 - SMc02696 0.24 +0.6 2,546,260 - SMc02696 0.24 -1.4 2,546,439 + SMc02696 0.63 +0.3 2,546,440 - SMc02696 0.63 -0.3 2,546,559 - SMc02696 0.89 +0.4 2,546,625 + +0.2 2,546,626 - -1.4 2,546,950 + SMc02697 0.73 -0.7 2,546,950 + SMc02697 0.73 -1.8 2,547,100 + -0.5 2,547,100 + -0.9 2,547,105 + -0.3 2,547,106 - -0.1 2,547,106 - +0.7 2,547,136 + -0.6 2,547,423 + SMc02698 0.56 -1.1 2,547,423 + SMc02698 0.56 +1.8 2,547,468 - SMc02698 0.64 -0.8 2,547,468 - SMc02698 0.64 -0.3 2,547,517 + SMc02698 0.73 -0.8 2,547,705 + +0.8 2,547,705 + +0.0 2,547,705 + -0.2 2,547,705 + -0.8 2,547,706 - +1.0 2,547,706 - -1.0 2,547,706 - -1.6 2,547,706 - -0.7 2,547,706 - +0.8 2,547,789 + -1.1 2,547,820 + +0.0 2,547,820 + +0.4
Or see this region's nucleotide sequence