Strain Fitness in Sinorhizobium meliloti 1021 around SMc02610

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02609 and SMc02610 are separated by 50 nucleotidesSMc02610 and SMc02611 are separated by 37 nucleotidesSMc02611 and SMc02612 are separated by 14 nucleotides SMc02609: SMc02609 - transcriptional regulator, at 102,517 to 103,491 SMc02609 SMc02610: SMc02610 - amidotransferase, at 103,542 to 104,504 SMc02610 SMc02611: SMc02611 - oxidoreductase, at 104,542 to 105,228 SMc02611 SMc02612: SMc02612 - oxidoreductase, at 105,243 to 106,571 SMc02612 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2at 102.592 kb on + strandat 102.649 kb on + strand, within SMc02609at 102.750 kb on + strand, within SMc02609at 102.750 kb on + strand, within SMc02609at 102.796 kb on - strand, within SMc02609at 102.858 kb on - strand, within SMc02609at 102.858 kb on - strand, within SMc02609at 103.099 kb on + strand, within SMc02609at 103.100 kb on - strand, within SMc02609at 103.394 kb on - strandat 103.394 kb on - strandat 103.394 kb on - strandat 103.562 kb on + strandat 103.592 kb on + strandat 103.592 kb on + strandat 103.722 kb on + strand, within SMc02610at 103.722 kb on + strand, within SMc02610at 103.723 kb on - strand, within SMc02610at 103.924 kb on + strand, within SMc02610at 103.924 kb on + strand, within SMc02610at 103.925 kb on - strand, within SMc02610at 103.925 kb on - strand, within SMc02610at 103.925 kb on - strand, within SMc02610at 103.959 kb on + strand, within SMc02610at 104.006 kb on - strand, within SMc02610at 104.006 kb on - strand, within SMc02610at 104.040 kb on - strand, within SMc02610at 104.120 kb on + strand, within SMc02610at 104.217 kb on + strand, within SMc02610at 104.218 kb on - strand, within SMc02610at 104.297 kb on + strand, within SMc02610at 104.298 kb on - strand, within SMc02610at 104.385 kb on + strand, within SMc02610at 104.385 kb on + strand, within SMc02610at 104.385 kb on + strand, within SMc02610at 104.386 kb on - strand, within SMc02610at 104.473 kb on + strandat 104.474 kb on - strandat 104.474 kb on - strandat 104.475 kb on + strandat 104.476 kb on - strandat 104.542 kb on - strandat 104.550 kb on + strandat 104.586 kb on + strandat 104.586 kb on + strandat 104.587 kb on - strandat 104.598 kb on + strandat 104.629 kb on + strand, within SMc02611at 104.630 kb on - strand, within SMc02611at 104.630 kb on - strand, within SMc02611at 104.833 kb on + strand, within SMc02611at 104.946 kb on + strand, within SMc02611at 104.947 kb on - strand, within SMc02611at 104.947 kb on - strand, within SMc02611at 104.947 kb on - strand, within SMc02611at 104.947 kb on - strand, within SMc02611at 105.022 kb on + strand, within SMc02611at 105.042 kb on - strand, within SMc02611at 105.172 kb on + strandat 105.172 kb on + strandat 105.226 kb on + strandat 105.243 kb on - strandat 105.243 kb on - strandat 105.249 kb on + strandat 105.261 kb on + strandat 105.261 kb on + strandat 105.261 kb on + strandat 105.262 kb on - strandat 105.262 kb on - strandat 105.262 kb on - strandat 105.262 kb on - strandat 105.262 kb on - strandat 105.263 kb on + strandat 105.263 kb on + strandat 105.264 kb on - strandat 105.297 kb on + strandat 105.297 kb on + strandat 105.297 kb on + strandat 105.297 kb on + strandat 105.297 kb on + strandat 105.299 kb on + strandat 105.300 kb on - strandat 105.300 kb on - strandat 105.340 kb on - strandat 105.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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102,592 + +1.1
102,649 + SMc02609 0.14 +1.3
102,750 + SMc02609 0.24 -0.1
102,750 + SMc02609 0.24 -0.1
102,796 - SMc02609 0.29 -0.0
102,858 - SMc02609 0.35 -0.7
102,858 - SMc02609 0.35 -1.0
103,099 + SMc02609 0.60 -0.2
103,100 - SMc02609 0.60 +0.8
103,394 - -0.2
103,394 - +0.2
103,394 - +1.3
103,562 + +0.2
103,592 + -0.2
103,592 + -0.1
103,722 + SMc02610 0.19 -0.5
103,722 + SMc02610 0.19 -1.9
103,723 - SMc02610 0.19 -0.7
103,924 + SMc02610 0.40 -1.0
103,924 + SMc02610 0.40 +0.8
103,925 - SMc02610 0.40 -0.1
103,925 - SMc02610 0.40 -0.5
103,925 - SMc02610 0.40 -0.3
103,959 + SMc02610 0.43 -2.1
104,006 - SMc02610 0.48 -1.1
104,006 - SMc02610 0.48 -1.7
104,040 - SMc02610 0.52 +0.5
104,120 + SMc02610 0.60 -0.3
104,217 + SMc02610 0.70 -0.6
104,218 - SMc02610 0.70 +2.3
104,297 + SMc02610 0.78 -0.0
104,298 - SMc02610 0.79 -0.1
104,385 + SMc02610 0.88 -0.2
104,385 + SMc02610 0.88 -0.8
104,385 + SMc02610 0.88 +1.7
104,386 - SMc02610 0.88 -0.2
104,473 + -0.6
104,474 - -0.1
104,474 - -0.1
104,475 + -0.5
104,476 - +0.9
104,542 - +1.3
104,550 + +2.0
104,586 + -0.0
104,586 + +0.1
104,587 - +0.2
104,598 + +1.5
104,629 + SMc02611 0.13 -0.4
104,630 - SMc02611 0.13 -0.8
104,630 - SMc02611 0.13 -0.3
104,833 + SMc02611 0.42 -1.5
104,946 + SMc02611 0.59 -0.5
104,947 - SMc02611 0.59 +0.3
104,947 - SMc02611 0.59 -0.6
104,947 - SMc02611 0.59 +0.7
104,947 - SMc02611 0.59 +1.9
105,022 + SMc02611 0.70 -0.1
105,042 - SMc02611 0.73 -0.1
105,172 + -0.8
105,172 + +0.4
105,226 + -1.7
105,243 - +0.9
105,243 - -0.0
105,249 + -0.7
105,261 + -0.4
105,261 + -0.7
105,261 + +0.2
105,262 - -0.4
105,262 - +0.1
105,262 - -0.0
105,262 - -0.4
105,262 - +0.8
105,263 + +0.2
105,263 + -0.2
105,264 - -0.1
105,297 + +0.2
105,297 + +0.1
105,297 + +0.2
105,297 + +2.3
105,297 + -0.2
105,299 + +0.4
105,300 - +1.8
105,300 - -0.1
105,340 - -0.0
105,340 - -1.4

Or see this region's nucleotide sequence