Strain Fitness in Sinorhizobium meliloti 1021 around SMc02451

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02450 and SMc02451 are separated by 160 nucleotidesSMc02451 and SMc04458 are separated by 245 nucleotides SMc02450: SMc02450 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 2,831,382 to 2,832,623 SMc02450 SMc02451: SMc02451 - hypothetical protein, at 2,832,784 to 2,833,638 SMc02451 SMc04458: SMc04458 - preprotein translocase subunit SecA, at 2,833,884 to 2,836,595 SMc04458 Position (kb) 2832 2833 2834Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2832.144 kb on - strand, within SMc02450at 2832.525 kb on - strandat 2832.786 kb on - strandat 2832.819 kb on - strandat 2833.018 kb on - strand, within SMc02451at 2833.018 kb on - strand, within SMc02451at 2833.629 kb on - strandat 2833.753 kb on + strandat 2833.770 kb on + strandat 2833.865 kb on + strandat 2833.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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2,832,144 - SMc02450 0.61 -2.7
2,832,525 - -1.3
2,832,786 - -2.1
2,832,819 - -0.7
2,833,018 - SMc02451 0.27 -2.4
2,833,018 - SMc02451 0.27 -1.4
2,833,629 - -1.5
2,833,753 + +3.1
2,833,770 + -1.8
2,833,865 + +0.3
2,833,865 + +0.0

Or see this region's nucleotide sequence