Strain Fitness in Sinorhizobium meliloti 1021 around SMc02292

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc05002 and SMc02291 overlap by 73 nucleotidesSMc02291 and SMc02292 are separated by 375 nucleotidesSMc02292 and SMc02295 are separated by 3 nucleotides SMc02289: SMc02289 - transposase ISRM11/ISRM2011-2, at 663,284 to 663,889 SMc02289 SMc05002: SMc05002 - hypothetical protein, at 663,410 to 663,895 SMc05002 SMc02291: SMc02291 - transposase ISRM11/ISRM2011-2, at 663,823 to 664,230 SMc02291 SMc02292: SMc02292 - type I restriction enzyme R protein, at 664,606 to 667,803 SMc02292 SMc02295: SMc02295 - specificity protein S, at 667,807 to 669,081 SMc02295 Position (kb) 664 665 666 667 668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 664.324 kb on + strandat 664.324 kb on + strandat 664.351 kb on - strandat 664.351 kb on - strandat 664.351 kb on - strandat 664.356 kb on + strandat 664.356 kb on + strandat 664.356 kb on + strandat 664.356 kb on + strandat 664.357 kb on - strandat 664.357 kb on - strandat 664.361 kb on + strandat 664.361 kb on + strandat 664.361 kb on + strandat 664.390 kb on + strandat 664.390 kb on + strandat 664.446 kb on + strandat 664.480 kb on - strandat 664.494 kb on + strandat 664.495 kb on - strandat 664.513 kb on + strandat 664.513 kb on + strandat 664.513 kb on + strandat 664.513 kb on + strandat 664.513 kb on + strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.514 kb on - strandat 664.515 kb on + strandat 664.646 kb on + strandat 664.646 kb on + strandat 664.646 kb on + strandat 664.686 kb on - strandat 664.709 kb on + strandat 664.709 kb on + strandat 664.710 kb on - strandat 664.998 kb on + strand, within SMc02292at 664.998 kb on + strand, within SMc02292at 664.999 kb on - strand, within SMc02292at 664.999 kb on - strand, within SMc02292at 665.000 kb on + strand, within SMc02292at 665.000 kb on + strand, within SMc02292at 665.001 kb on - strand, within SMc02292at 665.001 kb on - strand, within SMc02292at 665.001 kb on - strand, within SMc02292at 665.278 kb on + strand, within SMc02292at 665.278 kb on + strand, within SMc02292at 665.278 kb on + strand, within SMc02292at 665.599 kb on - strand, within SMc02292at 665.599 kb on - strand, within SMc02292at 665.630 kb on + strand, within SMc02292at 665.630 kb on + strand, within SMc02292at 665.630 kb on + strand, within SMc02292at 665.631 kb on - strand, within SMc02292at 665.631 kb on - strand, within SMc02292at 665.672 kb on + strand, within SMc02292at 665.672 kb on + strand, within SMc02292at 665.768 kb on + strandat 665.768 kb on + strand, within SMc02292at 665.769 kb on - strand, within SMc02292at 665.769 kb on - strand, within SMc02292at 666.089 kb on + strand, within SMc02292at 666.089 kb on + strand, within SMc02292at 666.089 kb on + strand, within SMc02292at 666.090 kb on - strand, within SMc02292at 666.090 kb on - strand, within SMc02292at 666.090 kb on - strand, within SMc02292at 666.090 kb on - strand, within SMc02292at 666.090 kb on - strand, within SMc02292at 666.351 kb on - strand, within SMc02292at 666.389 kb on + strand, within SMc02292at 666.390 kb on - strand, within SMc02292at 666.395 kb on + strand, within SMc02292at 666.396 kb on - strand, within SMc02292at 666.516 kb on + strand, within SMc02292at 666.517 kb on - strand, within SMc02292at 666.521 kb on + strand, within SMc02292at 666.632 kb on + strand, within SMc02292at 666.633 kb on - strand, within SMc02292at 666.738 kb on + strand, within SMc02292at 666.855 kb on + strand, within SMc02292at 666.856 kb on - strand, within SMc02292at 666.972 kb on + strand, within SMc02292at 666.972 kb on + strand, within SMc02292at 666.973 kb on - strand, within SMc02292at 666.973 kb on - strand, within SMc02292at 667.103 kb on + strand, within SMc02292at 667.103 kb on + strand, within SMc02292at 667.104 kb on - strand, within SMc02292at 667.104 kb on - strand, within SMc02292at 667.121 kb on + strand, within SMc02292at 667.122 kb on - strand, within SMc02292at 667.209 kb on - strand, within SMc02292at 667.360 kb on - strand, within SMc02292at 667.436 kb on + strand, within SMc02292at 667.436 kb on + strand, within SMc02292at 667.604 kb on + strandat 667.605 kb on - strandat 667.661 kb on + strandat 667.661 kb on + strandat 667.808 kb on + strandat 667.867 kb on + strandat 667.867 kb on + strandat 667.868 kb on - strandat 667.868 kb on - strandat 667.868 kb on - strandat 667.905 kb on + strandat 667.906 kb on - strandat 667.906 kb on - strandat 667.969 kb on - strand, within SMc02295at 667.969 kb on - strand, within SMc02295at 667.969 kb on - strand, within SMc02295at 667.997 kb on - strand, within SMc02295at 668.148 kb on + strand, within SMc02295at 668.148 kb on + strand, within SMc02295at 668.149 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.235 kb on + strand, within SMc02295at 668.241 kb on + strand, within SMc02295at 668.241 kb on + strand, within SMc02295at 668.320 kb on + strand, within SMc02295at 668.320 kb on + strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.328 kb on + strand, within SMc02295at 668.329 kb on - strand, within SMc02295at 668.329 kb on - strand, within SMc02295at 668.329 kb on - strandat 668.330 kb on + strand, within SMc02295at 668.330 kb on + strand, within SMc02295at 668.331 kb on - strand, within SMc02295at 668.331 kb on - strand, within SMc02295at 668.337 kb on + strand, within SMc02295at 668.338 kb on - strand, within SMc02295at 668.623 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.626 kb on - strand, within SMc02295at 668.626 kb on - strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.638 kb on - strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.648 kb on - strand, within SMc02295at 668.706 kb on + strand, within SMc02295at 668.717 kb on + strand, within SMc02295at 668.717 kb on + strand, within SMc02295at 668.718 kb on - strand, within SMc02295at 668.718 kb on - strand, within SMc02295

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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664,324 + +0.5
664,324 + -0.3
664,351 - +0.5
664,351 - -1.1
664,351 - -0.7
664,356 + -0.2
664,356 + -0.2
664,356 + -0.1
664,356 + +0.4
664,357 - -0.9
664,357 - +0.7
664,361 + +2.4
664,361 + -0.5
664,361 + +0.4
664,390 + +0.9
664,390 + -2.8
664,446 + -0.6
664,480 - -0.1
664,494 + +0.6
664,495 - -0.7
664,513 + +1.2
664,513 + -0.1
664,513 + -0.2
664,513 + -0.5
664,513 + -0.1
664,514 - +0.6
664,514 - +0.4
664,514 - -0.0
664,514 - +1.1
664,515 + -0.1
664,646 + +0.1
664,646 + -0.7
664,646 + +2.9
664,686 - +2.9
664,709 + -0.4
664,709 + +0.9
664,710 - -0.6
664,998 + SMc02292 0.12 -0.7
664,998 + SMc02292 0.12 +0.1
664,999 - SMc02292 0.12 +0.0
664,999 - SMc02292 0.12 -0.1
665,000 + SMc02292 0.12 +0.3
665,000 + SMc02292 0.12 -0.7
665,001 - SMc02292 0.12 +1.9
665,001 - SMc02292 0.12 +1.0
665,001 - SMc02292 0.12 +0.6
665,278 + SMc02292 0.21 -0.1
665,278 + SMc02292 0.21 +0.9
665,278 + SMc02292 0.21 -0.6
665,599 - SMc02292 0.31 +1.3
665,599 - SMc02292 0.31 +0.1
665,630 + SMc02292 0.32 +2.4
665,630 + SMc02292 0.32 +0.4
665,630 + SMc02292 0.32 -0.8
665,631 - SMc02292 0.32 -0.1
665,631 - SMc02292 0.32 +0.7
665,672 + SMc02292 0.33 +0.9
665,672 + SMc02292 0.33 +0.6
665,768 + -0.5
665,768 + SMc02292 0.36 +0.1
665,769 - SMc02292 0.36 +1.0
665,769 - SMc02292 0.36 -0.2
666,089 + SMc02292 0.46 +0.4
666,089 + SMc02292 0.46 +0.5
666,089 + SMc02292 0.46 +0.2
666,090 - SMc02292 0.46 +0.3
666,090 - SMc02292 0.46 +0.2
666,090 - SMc02292 0.46 -0.2
666,090 - SMc02292 0.46 -0.8
666,090 - SMc02292 0.46 +0.4
666,351 - SMc02292 0.55 +0.2
666,389 + SMc02292 0.56 +1.2
666,390 - SMc02292 0.56 -0.3
666,395 + SMc02292 0.56 +1.3
666,396 - SMc02292 0.56 +0.7
666,516 + SMc02292 0.60 -0.8
666,517 - SMc02292 0.60 -0.4
666,521 + SMc02292 0.60 +0.3
666,632 + SMc02292 0.63 +0.9
666,633 - SMc02292 0.63 +1.0
666,738 + SMc02292 0.67 +0.5
666,855 + SMc02292 0.70 +0.1
666,856 - SMc02292 0.70 +0.2
666,972 + SMc02292 0.74 +0.2
666,972 + SMc02292 0.74 -1.0
666,973 - SMc02292 0.74 -0.7
666,973 - SMc02292 0.74 -1.3
667,103 + SMc02292 0.78 -0.8
667,103 + SMc02292 0.78 +0.3
667,104 - SMc02292 0.78 -0.4
667,104 - SMc02292 0.78 +0.3
667,121 + SMc02292 0.79 -0.2
667,122 - SMc02292 0.79 +0.1
667,209 - SMc02292 0.81 -0.3
667,360 - SMc02292 0.86 +0.0
667,436 + SMc02292 0.88 +0.0
667,436 + SMc02292 0.88 -0.7
667,604 + -0.1
667,605 - +0.4
667,661 + +0.7
667,661 + -0.1
667,808 + +0.7
667,867 + +1.1
667,867 + -1.5
667,868 - +0.4
667,868 - +0.2
667,868 - +0.7
667,905 + -0.3
667,906 - +0.7
667,906 - -0.2
667,969 - SMc02295 0.13 +0.4
667,969 - SMc02295 0.13 +0.6
667,969 - SMc02295 0.13 +0.9
667,997 - SMc02295 0.15 -0.1
668,148 + SMc02295 0.27 -0.5
668,148 + SMc02295 0.27 +1.4
668,149 - SMc02295 0.27 -0.3
668,171 - SMc02295 0.29 +0.0
668,171 - SMc02295 0.29 -0.2
668,171 - SMc02295 0.29 +0.1
668,235 + SMc02295 0.34 +0.6
668,241 + SMc02295 0.34 +0.1
668,241 + SMc02295 0.34 -0.2
668,320 + SMc02295 0.40 -0.8
668,320 + SMc02295 0.40 +1.2
668,321 - SMc02295 0.40 -0.5
668,321 - SMc02295 0.40 +0.4
668,321 - SMc02295 0.40 -0.7
668,321 - SMc02295 0.40 -0.5
668,328 + SMc02295 0.41 -0.1
668,329 - SMc02295 0.41 +0.4
668,329 - SMc02295 0.41 -0.1
668,329 - -0.7
668,330 + SMc02295 0.41 -0.6
668,330 + SMc02295 0.41 +0.2
668,331 - SMc02295 0.41 -0.5
668,331 - SMc02295 0.41 -0.5
668,337 + SMc02295 0.42 +0.6
668,338 - SMc02295 0.42 +0.3
668,623 + SMc02295 0.64 +0.4
668,625 + SMc02295 0.64 +0.4
668,625 + SMc02295 0.64 +0.1
668,625 + SMc02295 0.64 +0.3
668,626 - SMc02295 0.64 +0.1
668,626 - SMc02295 0.64 -0.3
668,637 + SMc02295 0.65 +1.4
668,637 + SMc02295 0.65 +0.0
668,637 + SMc02295 0.65 +1.4
668,638 - SMc02295 0.65 +0.6
668,647 + SMc02295 0.66 +0.5
668,647 + SMc02295 0.66 -0.1
668,647 + SMc02295 0.66 -1.4
668,647 + SMc02295 0.66 +0.3
668,647 + SMc02295 0.66 -0.7
668,648 - SMc02295 0.66 +0.5
668,706 + SMc02295 0.71 -0.3
668,717 + SMc02295 0.71 +0.5
668,717 + SMc02295 0.71 -0.7
668,718 - SMc02295 0.71 +1.5
668,718 - SMc02295 0.71 +0.9

Or see this region's nucleotide sequence