Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01364 and SMc01363 are separated by 191 nucleotides SMc01363 and SMc01362 overlap by 1 nucleotides SMc01362 and SMc01361 are separated by 29 nucleotides
SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699
SMc01364
SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042
SMc01363
SMc01362: SMc01362 - glycerol-3-phosphate acyltransferase PlsY, at 1,421,042 to 1,421,653
SMc01362
SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975
SMc01361
Position (kb)
1419
1420
1421
1422 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1419.781 kb on + strand at 1419.781 kb on + strand at 1419.782 kb on - strand at 1419.782 kb on - strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.787 kb on + strand at 1419.788 kb on - strand at 1419.912 kb on + strand at 1419.912 kb on + strand at 1419.971 kb on + strand at 1419.971 kb on + strand at 1419.971 kb on + strand at 1419.972 kb on - strand at 1419.972 kb on - strand at 1419.998 kb on + strand at 1419.999 kb on - strand at 1419.999 kb on - strand at 1419.999 kb on - strand at 1420.294 kb on + strand, within SMc01363 at 1421.715 kb on - strand at 1421.715 kb on - strand at 1421.923 kb on + strand, within SMc01361 at 1421.924 kb on - strand, within SMc01361 at 1421.939 kb on + strand, within SMc01361
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,419,781 + +0.2 1,419,781 + -1.4 1,419,782 - +0.4 1,419,782 - +1.2 1,419,785 + -0.6 1,419,785 + +0.4 1,419,785 + +0.6 1,419,785 + +0.3 1,419,785 + +0.0 1,419,786 - +0.8 1,419,786 - +0.2 1,419,786 - -0.5 1,419,786 - -0.4 1,419,787 + -1.1 1,419,788 - -0.2 1,419,912 + +1.2 1,419,912 + -0.8 1,419,971 + +0.9 1,419,971 + +0.3 1,419,971 + -0.2 1,419,972 - +1.9 1,419,972 - +0.5 1,419,998 + +0.3 1,419,999 - +0.5 1,419,999 - +1.2 1,419,999 - -0.7 1,420,294 + SMc01363 0.35 +1.0 1,421,715 - -2.8 1,421,715 - -3.2 1,421,923 + SMc01361 0.19 +0.8 1,421,924 - SMc01361 0.19 -6.5 1,421,939 + SMc01361 0.20 -3.7
Or see this region's nucleotide sequence