Strain Fitness in Sinorhizobium meliloti 1021 around SMc00819

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00818 and SMc00819 are separated by 193 nucleotidesSMc00819 and SMc00820 are separated by 83 nucleotides SMc00818: SMc00818 - hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein), at 839,182 to 840,117 SMc00818 SMc00819: SMc00819 - catalase hydroperoxidase HPII(III) protein, at 840,311 to 841,795 SMc00819 SMc00820: SMc00820 - transcriptional regulator, at 841,879 to 842,829 SMc00820 Position (kb) 840 841 842Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 839.506 kb on - strand, within SMc00818at 839.571 kb on + strand, within SMc00818at 839.571 kb on + strand, within SMc00818at 839.636 kb on + strand, within SMc00818at 839.636 kb on + strand, within SMc00818at 839.636 kb on + strand, within SMc00818at 839.637 kb on - strand, within SMc00818at 839.637 kb on - strand, within SMc00818at 839.665 kb on - strand, within SMc00818at 839.768 kb on - strand, within SMc00818at 839.768 kb on - strand, within SMc00818at 839.768 kb on - strand, within SMc00818at 839.799 kb on - strand, within SMc00818at 839.822 kb on + strand, within SMc00818at 839.823 kb on - strand, within SMc00818at 839.823 kb on - strand, within SMc00818at 839.878 kb on - strand, within SMc00818at 840.110 kb on + strandat 840.111 kb on - strandat 840.111 kb on - strandat 840.414 kb on - strandat 840.530 kb on + strand, within SMc00819at 840.530 kb on + strand, within SMc00819at 840.531 kb on - strand, within SMc00819at 840.531 kb on - strand, within SMc00819at 840.694 kb on + strand, within SMc00819at 840.695 kb on - strand, within SMc00819at 840.695 kb on - strand, within SMc00819at 840.800 kb on + strand, within SMc00819at 840.801 kb on - strand, within SMc00819at 840.880 kb on + strand, within SMc00819at 840.881 kb on - strand, within SMc00819at 840.881 kb on - strand, within SMc00819at 840.881 kb on - strand, within SMc00819at 840.884 kb on + strand, within SMc00819at 840.891 kb on - strand, within SMc00819at 840.905 kb on + strand, within SMc00819at 840.906 kb on - strand, within SMc00819at 840.935 kb on + strand, within SMc00819at 840.936 kb on - strand, within SMc00819at 840.936 kb on - strand, within SMc00819at 840.936 kb on - strand, within SMc00819at 840.973 kb on + strand, within SMc00819at 840.973 kb on + strand, within SMc00819at 840.974 kb on - strand, within SMc00819at 840.974 kb on - strand, within SMc00819at 841.028 kb on + strand, within SMc00819at 841.028 kb on + strand, within SMc00819at 841.044 kb on + strand, within SMc00819at 841.046 kb on + strand, within SMc00819at 841.047 kb on - strand, within SMc00819at 841.127 kb on + strand, within SMc00819at 841.128 kb on - strand, within SMc00819at 841.128 kb on - strand, within SMc00819at 841.128 kb on - strand, within SMc00819at 841.170 kb on - strand, within SMc00819at 841.220 kb on + strand, within SMc00819at 841.261 kb on + strand, within SMc00819at 841.261 kb on + strand, within SMc00819at 841.355 kb on + strand, within SMc00819at 841.356 kb on - strand, within SMc00819at 841.528 kb on - strand, within SMc00819at 841.547 kb on + strand, within SMc00819at 841.547 kb on + strand, within SMc00819at 841.547 kb on + strand, within SMc00819at 841.574 kb on + strand, within SMc00819at 841.794 kb on - strandat 841.870 kb on + strandat 841.896 kb on + strandat 841.896 kb on + strandat 841.896 kb on + strandat 841.897 kb on - strandat 841.897 kb on - strandat 841.897 kb on - strandat 841.897 kb on - strandat 841.897 kb on - strandat 841.999 kb on - strand, within SMc00820at 842.210 kb on + strand, within SMc00820at 842.210 kb on + strand, within SMc00820at 842.456 kb on + strand, within SMc00820at 842.456 kb on + strand, within SMc00820at 842.456 kb on + strand, within SMc00820at 842.456 kb on + strand, within SMc00820at 842.456 kb on + strand, within SMc00820at 842.457 kb on - strand, within SMc00820at 842.457 kb on - strand, within SMc00820at 842.457 kb on - strand, within SMc00820at 842.510 kb on + strand, within SMc00820at 842.522 kb on + strand, within SMc00820at 842.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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839,506 - SMc00818 0.35 +0.1
839,571 + SMc00818 0.42 +0.3
839,571 + SMc00818 0.42 -0.4
839,636 + SMc00818 0.49 -0.4
839,636 + SMc00818 0.49 -0.1
839,636 + SMc00818 0.49 +0.4
839,637 - SMc00818 0.49 +0.3
839,637 - SMc00818 0.49 -0.1
839,665 - SMc00818 0.52 +0.8
839,768 - SMc00818 0.63 -0.2
839,768 - SMc00818 0.63 -0.8
839,768 - SMc00818 0.63 -1.0
839,799 - SMc00818 0.66 -0.5
839,822 + SMc00818 0.68 +0.2
839,823 - SMc00818 0.68 +0.3
839,823 - SMc00818 0.68 -1.7
839,878 - SMc00818 0.74 -0.2
840,110 + -1.4
840,111 - -0.2
840,111 - -0.1
840,414 - +0.2
840,530 + SMc00819 0.15 -1.1
840,530 + SMc00819 0.15 -0.1
840,531 - SMc00819 0.15 -1.1
840,531 - SMc00819 0.15 -1.2
840,694 + SMc00819 0.26 -0.3
840,695 - SMc00819 0.26 +0.4
840,695 - SMc00819 0.26 -1.0
840,800 + SMc00819 0.33 +0.3
840,801 - SMc00819 0.33 -4.3
840,880 + SMc00819 0.38 -0.0
840,881 - SMc00819 0.38 +1.4
840,881 - SMc00819 0.38 +0.4
840,881 - SMc00819 0.38 +0.3
840,884 + SMc00819 0.39 +0.3
840,891 - SMc00819 0.39 -0.7
840,905 + SMc00819 0.40 -0.5
840,906 - SMc00819 0.40 +0.2
840,935 + SMc00819 0.42 -0.2
840,936 - SMc00819 0.42 -1.0
840,936 - SMc00819 0.42 +0.3
840,936 - SMc00819 0.42 -1.2
840,973 + SMc00819 0.45 +0.9
840,973 + SMc00819 0.45 -1.2
840,974 - SMc00819 0.45 +0.2
840,974 - SMc00819 0.45 -0.9
841,028 + SMc00819 0.48 +0.4
841,028 + SMc00819 0.48 -0.7
841,044 + SMc00819 0.49 +1.5
841,046 + SMc00819 0.49 -0.9
841,047 - SMc00819 0.50 -0.6
841,127 + SMc00819 0.55 -0.3
841,128 - SMc00819 0.55 -0.3
841,128 - SMc00819 0.55 -0.8
841,128 - SMc00819 0.55 -0.7
841,170 - SMc00819 0.58 +0.0
841,220 + SMc00819 0.61 +0.2
841,261 + SMc00819 0.64 -0.8
841,261 + SMc00819 0.64 -0.4
841,355 + SMc00819 0.70 -1.1
841,356 - SMc00819 0.70 -0.2
841,528 - SMc00819 0.82 -0.4
841,547 + SMc00819 0.83 -0.1
841,547 + SMc00819 0.83 -3.6
841,547 + SMc00819 0.83 -0.5
841,574 + SMc00819 0.85 -0.6
841,794 - +0.8
841,870 + -0.4
841,896 + -0.4
841,896 + -0.6
841,896 + -1.7
841,897 - +0.1
841,897 - -0.1
841,897 - -0.8
841,897 - -0.7
841,897 - -1.7
841,999 - SMc00820 0.13 -1.1
842,210 + SMc00820 0.35 +0.8
842,210 + SMc00820 0.35 +0.2
842,456 + SMc00820 0.61 -2.2
842,456 + SMc00820 0.61 -0.7
842,456 + SMc00820 0.61 -0.9
842,456 + SMc00820 0.61 -1.3
842,456 + SMc00820 0.61 +0.3
842,457 - SMc00820 0.61 -1.7
842,457 - SMc00820 0.61 -0.3
842,457 - SMc00820 0.61 +0.5
842,510 + SMc00820 0.66 -0.1
842,522 + SMc00820 0.68 -2.4
842,788 + +0.2

Or see this region's nucleotide sequence