Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00416 and SMc00418 overlap by 11 nucleotides SMc00418 and SMc00419 are separated by 204 nucleotides SMc00419 and SMc00420 are separated by 185 nucleotides
SMc00416: SMc00416 - hypothetical protein, at 365,580 to 366,509
SMc00416
SMc00418: SMc00418 - hypothetical protein, at 366,499 to 366,867
SMc00418
SMc00419: SMc00419 - glutathione synthetase, at 367,072 to 368,019
SMc00419
SMc00420: SMc00420 - hypothetical protein, at 368,205 to 369,737
SMc00420
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 366.289 kb on - strand, within SMc00416 at 366.468 kb on + strand at 366.683 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.808 kb on + strand, within SMc00418 at 366.809 kb on - strand, within SMc00418 at 366.919 kb on + strand at 366.920 kb on - strand at 367.000 kb on + strand at 367.002 kb on + strand at 367.037 kb on + strand at 367.038 kb on - strand at 367.363 kb on + strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.364 kb on - strand, within SMc00419 at 367.366 kb on - strand, within SMc00419 at 367.564 kb on + strand, within SMc00419 at 367.660 kb on + strand, within SMc00419 at 367.661 kb on - strand, within SMc00419 at 367.662 kb on + strand, within SMc00419 at 367.663 kb on - strand, within SMc00419 at 367.663 kb on - strand, within SMc00419 at 367.663 kb on - strand, within SMc00419 at 367.907 kb on - strand, within SMc00419 at 368.025 kb on - strand at 368.057 kb on - strand at 368.204 kb on + strand at 368.205 kb on - strand at 368.205 kb on - strand at 368.205 kb on - strand at 368.294 kb on + strand at 368.295 kb on - strand at 368.837 kb on + strand, within SMc00420 at 368.837 kb on + strand, within SMc00420 at 368.837 kb on + strand, within SMc00420 at 368.837 kb on + strand, within SMc00420 at 368.837 kb on + strand, within SMc00420 at 368.838 kb on - strand, within SMc00420 at 368.838 kb on - strand, within SMc00420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 366,289 - SMc00416 0.76 -0.5 366,468 + -0.4 366,683 + SMc00418 0.50 -0.3 366,808 + SMc00418 0.84 -0.0 366,808 + SMc00418 0.84 -0.4 366,808 + SMc00418 0.84 -0.4 366,808 + SMc00418 0.84 -0.1 366,809 - SMc00418 0.84 +0.1 366,919 + +0.0 366,920 - -0.2 367,000 + -0.7 367,002 + -1.0 367,037 + -0.1 367,038 - -0.3 367,363 + SMc00419 0.31 -3.1 367,364 - SMc00419 0.31 -1.1 367,364 - SMc00419 0.31 -1.9 367,364 - SMc00419 0.31 -2.2 367,364 - SMc00419 0.31 -1.5 367,366 - SMc00419 0.31 -1.5 367,564 + SMc00419 0.52 -0.7 367,660 + SMc00419 0.62 -0.5 367,661 - SMc00419 0.62 -0.1 367,662 + SMc00419 0.62 -2.0 367,663 - SMc00419 0.62 -1.3 367,663 - SMc00419 0.62 -3.3 367,663 - SMc00419 0.62 -0.1 367,907 - SMc00419 0.88 -2.9 368,025 - +1.0 368,057 - -0.0 368,204 + +0.3 368,205 - -0.2 368,205 - -0.8 368,205 - +0.1 368,294 + -0.0 368,295 - +0.5 368,837 + SMc00420 0.41 -1.1 368,837 + SMc00420 0.41 -1.1 368,837 + SMc00420 0.41 -0.1 368,837 + SMc00420 0.41 +0.1 368,837 + SMc00420 0.41 -0.4 368,838 - SMc00420 0.41 -0.2 368,838 - SMc00420 0.41 -0.1
Or see this region's nucleotide sequence