Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21323

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21322 and SM_b21323 overlap by 14 nucleotidesSM_b21323 and SM_b21324 are separated by 22 nucleotidesSM_b21324 and SM_b21325 overlap by 8 nucleotides SM_b21322: SM_b21322 - hypothetical protein, at 991,456 to 992,628 _b21322 SM_b21323: SM_b21323 - hypothetical protein, at 992,615 to 993,787 _b21323 SM_b21324: SM_b21324 - glucose-1-phosphate thymidylyltransferase, at 993,810 to 994,691 _b21324 SM_b21325: SM_b21325 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 994,684 to 995,247 _b21325 Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1at 991.660 kb on + strand, within SM_b21322at 991.661 kb on - strand, within SM_b21322at 991.708 kb on + strand, within SM_b21322at 991.709 kb on - strand, within SM_b21322at 991.709 kb on - strand, within SM_b21322at 991.709 kb on - strand, within SM_b21322at 991.909 kb on - strand, within SM_b21322at 992.098 kb on + strand, within SM_b21322at 992.098 kb on + strand, within SM_b21322at 992.167 kb on + strand, within SM_b21322at 992.186 kb on + strand, within SM_b21322at 992.187 kb on - strand, within SM_b21322at 992.194 kb on + strand, within SM_b21322at 992.234 kb on - strand, within SM_b21322at 992.272 kb on + strand, within SM_b21322at 992.273 kb on - strand, within SM_b21322at 992.480 kb on - strand, within SM_b21322at 992.524 kb on + strandat 992.524 kb on + strandat 992.887 kb on + strand, within SM_b21323at 992.888 kb on - strand, within SM_b21323at 992.888 kb on - strand, within SM_b21323at 992.888 kb on - strand, within SM_b21323at 992.889 kb on + strand, within SM_b21323at 992.890 kb on - strand, within SM_b21323at 992.890 kb on - strand, within SM_b21323at 992.963 kb on + strand, within SM_b21323at 992.963 kb on + strand, within SM_b21323at 992.964 kb on - strand, within SM_b21323at 992.964 kb on - strand, within SM_b21323at 992.976 kb on + strand, within SM_b21323at 992.977 kb on - strand, within SM_b21323at 992.977 kb on - strand, within SM_b21323at 993.015 kb on - strand, within SM_b21323at 993.015 kb on - strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.141 kb on - strand, within SM_b21323at 993.161 kb on + strand, within SM_b21323at 993.161 kb on + strand, within SM_b21323at 993.162 kb on - strand, within SM_b21323at 993.166 kb on + strand, within SM_b21323at 993.167 kb on - strand, within SM_b21323at 993.242 kb on + strand, within SM_b21323at 993.242 kb on + strand, within SM_b21323at 993.243 kb on - strand, within SM_b21323at 993.243 kb on - strand, within SM_b21323at 993.434 kb on + strand, within SM_b21323at 993.671 kb on + strandat 993.671 kb on + strandat 993.674 kb on + strandat 993.675 kb on - strandat 993.677 kb on + strandat 993.677 kb on + strandat 993.678 kb on - strandat 993.678 kb on - strandat 993.701 kb on + strandat 993.701 kb on + strandat 993.702 kb on - strandat 993.702 kb on - strandat 993.702 kb on - strandat 993.702 kb on - strandat 993.913 kb on - strand, within SM_b21324at 993.913 kb on - strand, within SM_b21324at 993.915 kb on + strand, within SM_b21324at 993.945 kb on - strand, within SM_b21324at 994.038 kb on + strand, within SM_b21324at 994.039 kb on - strand, within SM_b21324at 994.422 kb on + strand, within SM_b21324at 994.423 kb on - strand, within SM_b21324at 994.423 kb on - strand, within SM_b21324at 994.467 kb on + strand, within SM_b21324at 994.482 kb on - strand, within SM_b21324at 994.579 kb on + strand, within SM_b21324at 994.580 kb on - strand, within SM_b21324at 994.644 kb on + strandat 994.645 kb on - strandat 994.653 kb on + strandat 994.774 kb on + strand, within SM_b21325at 994.775 kb on - strand, within SM_b21325

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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991,660 + SM_b21322 0.17 +0.6
991,661 - SM_b21322 0.17 +0.2
991,708 + SM_b21322 0.21 +0.8
991,709 - SM_b21322 0.22 +0.4
991,709 - SM_b21322 0.22 -0.5
991,709 - SM_b21322 0.22 -1.2
991,909 - SM_b21322 0.39 -0.5
992,098 + SM_b21322 0.55 -0.3
992,098 + SM_b21322 0.55 -0.5
992,167 + SM_b21322 0.61 +0.4
992,186 + SM_b21322 0.62 +0.4
992,187 - SM_b21322 0.62 +0.1
992,194 + SM_b21322 0.63 +0.7
992,234 - SM_b21322 0.66 -0.7
992,272 + SM_b21322 0.70 -0.9
992,273 - SM_b21322 0.70 +0.3
992,480 - SM_b21322 0.87 -0.7
992,524 + +0.3
992,524 + +0.5
992,887 + SM_b21323 0.23 +0.1
992,888 - SM_b21323 0.23 -0.0
992,888 - SM_b21323 0.23 +0.4
992,888 - SM_b21323 0.23 -0.2
992,889 + SM_b21323 0.23 -0.9
992,890 - SM_b21323 0.23 -0.9
992,890 - SM_b21323 0.23 +0.2
992,963 + SM_b21323 0.30 -0.0
992,963 + SM_b21323 0.30 +0.9
992,964 - SM_b21323 0.30 -0.1
992,964 - SM_b21323 0.30 -0.1
992,976 + SM_b21323 0.31 -0.2
992,977 - SM_b21323 0.31 -1.3
992,977 - SM_b21323 0.31 -0.7
993,015 - SM_b21323 0.34 +0.1
993,015 - SM_b21323 0.34 -2.2
993,131 + SM_b21323 0.44 +1.1
993,131 + SM_b21323 0.44 -0.1
993,131 + SM_b21323 0.44 -0.8
993,131 + SM_b21323 0.44 -0.9
993,131 + SM_b21323 0.44 -1.7
993,132 - SM_b21323 0.44 +0.1
993,132 - SM_b21323 0.44 -0.1
993,132 - SM_b21323 0.44 +0.1
993,132 - SM_b21323 0.44 +0.4
993,132 - SM_b21323 0.44 -0.5
993,141 - SM_b21323 0.45 -0.7
993,161 + SM_b21323 0.47 +0.3
993,161 + SM_b21323 0.47 -0.5
993,162 - SM_b21323 0.47 -0.3
993,166 + SM_b21323 0.47 +0.1
993,167 - SM_b21323 0.47 -0.5
993,242 + SM_b21323 0.53 +0.0
993,242 + SM_b21323 0.53 -1.8
993,243 - SM_b21323 0.54 +0.6
993,243 - SM_b21323 0.54 +0.7
993,434 + SM_b21323 0.70 -0.4
993,671 + -0.1
993,671 + +0.7
993,674 + +0.3
993,675 - +0.1
993,677 + -0.3
993,677 + +0.8
993,678 - -0.2
993,678 - +0.1
993,701 + +0.3
993,701 + +0.1
993,702 - +0.5
993,702 - -0.2
993,702 - +0.7
993,702 - +0.8
993,913 - SM_b21324 0.12 +0.3
993,913 - SM_b21324 0.12 -0.7
993,915 + SM_b21324 0.12 -1.0
993,945 - SM_b21324 0.15 +0.2
994,038 + SM_b21324 0.26 +0.5
994,039 - SM_b21324 0.26 +0.5
994,422 + SM_b21324 0.69 -0.4
994,423 - SM_b21324 0.70 +0.5
994,423 - SM_b21324 0.70 -1.1
994,467 + SM_b21324 0.74 -0.0
994,482 - SM_b21324 0.76 -0.7
994,579 + SM_b21324 0.87 +0.9
994,580 - SM_b21324 0.87 +0.5
994,644 + -0.3
994,645 - +0.3
994,653 + +0.0
994,774 + SM_b21325 0.16 -0.4
994,775 - SM_b21325 0.16 +0.1

Or see this region's nucleotide sequence