Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21178 and SM_b21179 are separated by 102 nucleotides SM_b21179 and SM_b21180 are separated by 30 nucleotides
SM_b21178: SM_b21178 - membrane protein, methyltransferase, at 924,277 to 925,530
_b21178
SM_b21179: SM_b21179 - FAD-dependent glycerol-3-phosphate dehydrogenase, at 925,633 to 926,808
_b21179
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
Position (kb) 925
926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 924.645 kb on + strand, within SM_b21178 at 924.734 kb on + strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 925.260 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.340 kb on - strand, within SM_b21178 at 925.340 kb on - strand, within SM_b21178 at 925.468 kb on - strand at 925.573 kb on + strand at 925.574 kb on - strand at 925.574 kb on - strand at 925.577 kb on + strand at 925.577 kb on + strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.908 kb on - strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.367 kb on - strand, within SM_b21179 at 926.516 kb on - strand, within SM_b21179 at 926.603 kb on + strand, within SM_b21179 at 926.604 kb on - strand, within SM_b21179 at 926.702 kb on + strand at 926.751 kb on - strand at 926.751 kb on - strand at 926.762 kb on + strand at 926.763 kb on - strand at 926.763 kb on - strand at 926.791 kb on + strand at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 924,645 + SM_b21178 0.29 -1.4 924,734 + SM_b21178 0.36 -0.1 924,735 - SM_b21178 0.37 -0.0 924,735 - SM_b21178 0.37 +0.8 924,792 - SM_b21178 0.41 -1.0 924,792 - SM_b21178 0.41 -0.2 924,792 - SM_b21178 0.41 -0.3 924,792 - SM_b21178 0.41 -0.4 924,792 - SM_b21178 0.41 +0.8 924,792 - SM_b21178 0.41 -2.6 924,792 - SM_b21178 0.41 -2.3 924,860 + SM_b21178 0.46 +0.5 924,860 + SM_b21178 0.46 -0.2 924,860 + SM_b21178 0.46 -0.9 924,860 + SM_b21178 0.46 -0.1 925,260 + SM_b21178 0.78 -0.7 925,339 + SM_b21178 0.85 +0.3 925,339 + SM_b21178 0.85 -0.4 925,339 + SM_b21178 0.85 +0.1 925,340 - SM_b21178 0.85 -1.9 925,340 - SM_b21178 0.85 +0.2 925,468 - -0.6 925,573 + -0.9 925,574 - +0.1 925,574 - +0.5 925,577 + +0.4 925,577 + +0.1 925,578 - -0.2 925,578 - +0.0 925,578 - -0.4 925,578 - -0.2 925,578 - -1.2 925,908 - SM_b21179 0.23 -1.3 926,062 + SM_b21179 0.36 -3.0 926,062 + SM_b21179 0.36 -0.1 926,367 - SM_b21179 0.62 -0.4 926,516 - SM_b21179 0.75 -0.0 926,603 + SM_b21179 0.82 -0.1 926,604 - SM_b21179 0.83 -0.5 926,702 + +0.0 926,751 - +0.5 926,751 - -0.5 926,762 + -0.4 926,763 - +0.3 926,763 - -2.2 926,791 + +0.4 927,188 + SM_b21180 0.37 -1.8 927,188 + SM_b21180 0.37 +0.8 927,189 - SM_b21180 0.37 +0.1 927,257 + SM_b21180 0.44 -0.7 927,257 + SM_b21180 0.44 -1.1 927,308 - SM_b21180 0.49 +0.0
Or see this region's nucleotide sequence