Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20920

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20918 and SM_b20919 overlap by 4 nucleotidesSM_b20919 and SM_b20920 overlap by 51 nucleotidesSM_b20920 and SM_b20921 are separated by 54 nucleotidesSM_b20921 and SM_b20922 overlap by 116 nucleotides SM_b20918: SM_b20918 - transposase of insertion sequence ISRm1 orfA protein, at 1,325,890 to 1,326,282 _b20918 SM_b20919: SM_b20919 - transposase of insertion sequence ISRm1 orfB protein, at 1,326,279 to 1,327,109 _b20919 SM_b20920: SM_b20920 - hypothetical protein, at 1,327,059 to 1,327,481 _b20920 SM_b20921: SM_b20921 - hypothetical protein, at 1,327,536 to 1,327,778 _b20921 SM_b20922: SM_b20922 - hypothetical protein, at 1,327,663 to 1,328,715 _b20922 Position (kb) 1327 1328Strain fitness (log2 ratio) -2 -1 0 1 2at 1327.187 kb on + strand, within SM_b20920at 1327.191 kb on + strand, within SM_b20920at 1327.192 kb on - strand, within SM_b20920at 1327.192 kb on - strand, within SM_b20920at 1327.192 kb on - strand, within SM_b20920at 1327.440 kb on - strandat 1327.448 kb on + strandat 1327.449 kb on - strandat 1327.449 kb on - strandat 1327.451 kb on - strandat 1327.522 kb on + strandat 1327.522 kb on + strandat 1327.537 kb on + strandat 1327.618 kb on - strand, within SM_b20921at 1327.618 kb on - strand, within SM_b20921at 1327.900 kb on + strand, within SM_b20922at 1327.901 kb on - strand, within SM_b20922at 1327.901 kb on - strand, within SM_b20922at 1328.016 kb on + strand, within SM_b20922at 1328.016 kb on + strand, within SM_b20922at 1328.017 kb on - strand, within SM_b20922at 1328.211 kb on + strand, within SM_b20922at 1328.212 kb on - strand, within SM_b20922at 1328.438 kb on + strand, within SM_b20922at 1328.438 kb on + strand, within SM_b20922at 1328.439 kb on - strand, within SM_b20922at 1328.439 kb on - strand, within SM_b20922

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,327,187 + SM_b20920 0.30 -1.2
1,327,191 + SM_b20920 0.31 +0.5
1,327,192 - SM_b20920 0.31 -0.5
1,327,192 - SM_b20920 0.31 -1.8
1,327,192 - SM_b20920 0.31 -1.2
1,327,440 - +0.6
1,327,448 + +0.3
1,327,449 - +0.9
1,327,449 - -0.3
1,327,451 - +0.0
1,327,522 + -1.8
1,327,522 + -0.4
1,327,537 + -0.4
1,327,618 - SM_b20921 0.34 -0.2
1,327,618 - SM_b20921 0.34 -0.9
1,327,900 + SM_b20922 0.23 +1.8
1,327,901 - SM_b20922 0.23 -0.5
1,327,901 - SM_b20922 0.23 -0.3
1,328,016 + SM_b20922 0.34 -0.0
1,328,016 + SM_b20922 0.34 +1.8
1,328,017 - SM_b20922 0.34 +0.2
1,328,211 + SM_b20922 0.52 +0.5
1,328,212 - SM_b20922 0.52 +0.1
1,328,438 + SM_b20922 0.74 -0.5
1,328,438 + SM_b20922 0.74 -1.0
1,328,439 - SM_b20922 0.74 +1.6
1,328,439 - SM_b20922 0.74 -0.0

Or see this region's nucleotide sequence