Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20823 and SM_b20824 are separated by 610 nucleotides SM_b20824 and SM_b20825 are separated by 164 nucleotides
SM_b20823: SM_b20823 - cell surface saccharide synthesis protein, at 611,880 to 612,911
_b20823
SM_b20824: SM_b20824 - hypothetical protein, at 613,522 to 615,858
_b20824
SM_b20825: SM_b20825 - acetyltransferase, cysElacA/lpxA/nodL family protein, at 616,023 to 616,793
_b20825
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.541 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.593 kb on + strand, within SM_b20823 at 612.594 kb on - strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.677 kb on - strand, within SM_b20823 at 612.681 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.859 kb on - strand at 612.859 kb on - strand at 612.955 kb on - strand at 613.022 kb on + strand at 613.022 kb on + strand at 613.023 kb on - strand at 613.119 kb on + strand at 613.120 kb on - strand at 613.125 kb on + strand at 613.125 kb on + strand at 613.126 kb on - strand at 613.126 kb on - strand at 613.213 kb on + strand at 613.214 kb on - strand at 613.226 kb on - strand at 613.226 kb on - strand at 613.229 kb on + strand at 613.229 kb on + strand at 613.230 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.242 kb on + strand at 613.323 kb on + strand at 613.338 kb on + strand at 613.338 kb on + strand at 613.357 kb on + strand at 613.371 kb on + strand at 613.429 kb on - strand at 613.429 kb on - strand at 613.448 kb on - strand at 613.532 kb on - strand at 613.532 kb on - strand at 613.569 kb on - strand at 613.632 kb on + strand at 613.632 kb on + strand at 613.632 kb on + strand at 613.633 kb on - strand at 613.633 kb on - strand at 613.633 kb on - strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.703 kb on - strand at 613.730 kb on + strand at 613.730 kb on + strand at 613.730 kb on + strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.768 kb on - strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.814 kb on - strand, within SM_b20824 at 613.823 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.016 kb on - strand, within SM_b20824 at 614.016 kb on - strand, within SM_b20824 at 614.085 kb on - strand, within SM_b20824 at 614.124 kb on + strand, within SM_b20824 at 614.166 kb on + strand, within SM_b20824 at 614.166 kb on + strand, within SM_b20824 at 614.167 kb on - strand, within SM_b20824 at 614.423 kb on - strand, within SM_b20824 at 614.435 kb on + strand, within SM_b20824 at 614.436 kb on - strand, within SM_b20824 at 614.436 kb on - strand, within SM_b20824 at 614.436 kb on - strand, within SM_b20824 at 614.513 kb on + strand, within SM_b20824 at 614.531 kb on + strand, within SM_b20824 at 614.532 kb on - strand, within SM_b20824 at 614.532 kb on - strand, within SM_b20824 at 614.532 kb on - strand, within SM_b20824 at 614.535 kb on - strand, within SM_b20824 at 614.613 kb on + strand, within SM_b20824 at 614.634 kb on + strand, within SM_b20824 at 614.634 kb on + strand, within SM_b20824 at 614.634 kb on + strand, within SM_b20824 at 614.635 kb on - strand, within SM_b20824 at 614.636 kb on + strand, within SM_b20824 at 614.637 kb on - strand, within SM_b20824 at 614.637 kb on - strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.766 kb on - strand, within SM_b20824 at 614.766 kb on - strand, within SM_b20824 at 614.858 kb on + strand, within SM_b20824 at 615.096 kb on + strand, within SM_b20824 at 615.096 kb on + strand, within SM_b20824 at 615.097 kb on - strand, within SM_b20824 at 615.099 kb on - strand, within SM_b20824 at 615.162 kb on - strand, within SM_b20824 at 615.263 kb on + strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.303 kb on + strand, within SM_b20824 at 615.304 kb on - strand, within SM_b20824 at 615.522 kb on - strand, within SM_b20824 at 615.522 kb on - strand, within SM_b20824 at 615.548 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.644 kb on + strand at 615.644 kb on + strand at 615.645 kb on - strand at 615.647 kb on + strand at 615.647 kb on + strand at 615.648 kb on - strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.722 kb on - strand at 615.794 kb on - strand at 615.872 kb on + strand at 615.872 kb on + strand at 615.873 kb on - strand at 615.893 kb on + strand at 615.894 kb on - strand at 615.956 kb on + strand at 615.971 kb on - strand at 616.036 kb on + strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.058 kb on + strand at 616.058 kb on + strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.070 kb on + strand at 616.070 kb on + strand at 616.071 kb on - strand at 616.071 kb on - strand at 616.071 kb on - strand at 616.088 kb on + strand at 616.089 kb on - strand at 616.139 kb on + strand, within SM_b20825 at 616.140 kb on - strand at 616.191 kb on + strand, within SM_b20825 at 616.192 kb on - strand, within SM_b20825 at 616.290 kb on - strand, within SM_b20825 at 616.296 kb on - strand, within SM_b20825 at 616.296 kb on - strand, within SM_b20825 at 616.478 kb on + strand, within SM_b20825 at 616.479 kb on - strand, within SM_b20825 at 616.479 kb on - strand, within SM_b20825 at 616.535 kb on + strand, within SM_b20825 at 616.536 kb on - strand, within SM_b20825 at 616.554 kb on + strand, within SM_b20825 at 616.554 kb on + strand, within SM_b20825 at 616.555 kb on - strand, within SM_b20825 at 616.555 kb on - strand, within SM_b20825 at 616.697 kb on + strand, within SM_b20825 at 616.698 kb on - strand, within SM_b20825 at 616.740 kb on + strand at 616.763 kb on + strand at 616.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 612,541 + SM_b20823 0.64 -0.5 612,549 + SM_b20823 0.65 -2.2 612,549 + SM_b20823 0.65 -0.7 612,549 + SM_b20823 0.65 -1.3 612,549 + SM_b20823 0.65 -0.9 612,549 + SM_b20823 0.65 -1.5 612,589 + SM_b20823 0.69 -0.7 612,589 + SM_b20823 0.69 -0.0 612,590 - SM_b20823 0.69 +0.7 612,590 - SM_b20823 0.69 -2.4 612,593 + SM_b20823 0.69 -1.5 612,594 - SM_b20823 0.69 -0.5 612,676 + SM_b20823 0.77 -0.9 612,676 + SM_b20823 0.77 -1.5 612,676 + SM_b20823 0.77 -0.7 612,677 - SM_b20823 0.77 -0.1 612,681 - SM_b20823 0.78 -0.1 612,772 - SM_b20823 0.86 -1.0 612,772 - SM_b20823 0.86 +0.1 612,859 - -0.8 612,859 - -0.7 612,955 - -1.0 613,022 + -0.1 613,022 + +0.2 613,023 - +1.2 613,119 + +0.6 613,120 - +2.5 613,125 + +1.2 613,125 + +0.1 613,126 - +0.0 613,126 - +2.3 613,213 + +0.1 613,214 - +0.3 613,226 - +0.0 613,226 - -0.3 613,229 + -0.7 613,229 + +0.3 613,230 - -0.0 613,237 + -0.3 613,237 + +0.3 613,242 + +0.9 613,323 + -0.2 613,338 + -0.6 613,338 + -1.9 613,357 + +0.2 613,371 + +0.8 613,429 - -0.1 613,429 - -0.0 613,448 - -0.9 613,532 - -0.1 613,532 - +0.1 613,569 - +0.8 613,632 + -0.7 613,632 + +0.5 613,632 + -0.3 613,633 - +1.5 613,633 - -3.0 613,633 - -0.2 613,689 + -0.1 613,689 + -0.1 613,689 + +0.3 613,689 + -1.1 613,690 - +0.7 613,690 - -1.2 613,690 - +0.3 613,690 - -1.3 613,690 - +0.7 613,690 - -0.7 613,703 - +0.1 613,730 + +0.3 613,730 + -2.1 613,730 + -0.0 613,731 - -0.3 613,731 - +0.7 613,731 - -1.1 613,731 - +0.5 613,768 - SM_b20824 0.11 -1.0 613,813 + SM_b20824 0.12 +2.8 613,813 + SM_b20824 0.12 -0.1 613,813 + SM_b20824 0.12 -0.5 613,814 - SM_b20824 0.12 -0.2 613,823 + SM_b20824 0.13 +0.0 614,015 + SM_b20824 0.21 -0.7 614,015 + SM_b20824 0.21 +0.0 614,015 + SM_b20824 0.21 -1.0 614,015 + SM_b20824 0.21 -0.9 614,015 + SM_b20824 0.21 +0.7 614,016 - SM_b20824 0.21 +0.2 614,016 - SM_b20824 0.21 +0.7 614,085 - SM_b20824 0.24 -0.5 614,124 + SM_b20824 0.26 -1.4 614,166 + SM_b20824 0.28 -0.1 614,166 + SM_b20824 0.28 -0.2 614,167 - SM_b20824 0.28 +0.9 614,423 - SM_b20824 0.39 +1.1 614,435 + SM_b20824 0.39 -0.1 614,436 - SM_b20824 0.39 +0.9 614,436 - SM_b20824 0.39 +0.6 614,436 - SM_b20824 0.39 +1.1 614,513 + SM_b20824 0.42 +0.1 614,531 + SM_b20824 0.43 +0.1 614,532 - SM_b20824 0.43 +0.9 614,532 - SM_b20824 0.43 -0.1 614,532 - SM_b20824 0.43 +0.1 614,535 - SM_b20824 0.43 +0.3 614,613 + SM_b20824 0.47 -0.3 614,634 + SM_b20824 0.48 -0.3 614,634 + SM_b20824 0.48 -0.3 614,634 + SM_b20824 0.48 -0.1 614,635 - SM_b20824 0.48 -1.4 614,636 + SM_b20824 0.48 -0.1 614,637 - SM_b20824 0.48 -0.6 614,637 - SM_b20824 0.48 -0.2 614,762 + SM_b20824 0.53 -0.4 614,762 + SM_b20824 0.53 -0.4 614,762 + SM_b20824 0.53 -0.1 614,762 + SM_b20824 0.53 -0.7 614,762 + SM_b20824 0.53 -1.1 614,762 + SM_b20824 0.53 +0.0 614,763 - SM_b20824 0.53 +0.2 614,763 - SM_b20824 0.53 +0.9 614,763 - SM_b20824 0.53 +0.8 614,763 - SM_b20824 0.53 -0.8 614,763 - SM_b20824 0.53 -1.1 614,766 - SM_b20824 0.53 -0.2 614,766 - SM_b20824 0.53 +0.3 614,858 + SM_b20824 0.57 -0.4 615,096 + SM_b20824 0.67 -0.0 615,096 + SM_b20824 0.67 -0.5 615,097 - SM_b20824 0.67 +0.2 615,099 - SM_b20824 0.67 -1.2 615,162 - SM_b20824 0.70 -0.0 615,263 + SM_b20824 0.74 +1.5 615,264 - SM_b20824 0.75 +0.0 615,264 - SM_b20824 0.75 +0.0 615,264 - SM_b20824 0.75 -0.1 615,303 + SM_b20824 0.76 +0.6 615,304 - SM_b20824 0.76 -0.7 615,522 - SM_b20824 0.86 -1.4 615,522 - SM_b20824 0.86 +0.1 615,548 + SM_b20824 0.87 +0.4 615,571 + SM_b20824 0.88 -2.1 615,571 + SM_b20824 0.88 -1.1 615,571 + SM_b20824 0.88 -0.7 615,572 - SM_b20824 0.88 -0.1 615,572 - SM_b20824 0.88 -0.3 615,572 - SM_b20824 0.88 -0.9 615,644 + +0.5 615,644 + -0.8 615,645 - -1.2 615,647 + -0.3 615,647 + -0.3 615,648 - -0.0 615,721 + +0.8 615,721 + -1.1 615,721 + +0.3 615,721 + -2.2 615,721 + +0.2 615,721 + -0.0 615,721 + -1.1 615,722 - +0.3 615,794 - -0.9 615,872 + -0.7 615,872 + +0.6 615,873 - +0.2 615,893 + -0.4 615,894 - -0.0 615,956 + +0.9 615,971 - -0.3 616,036 + -0.4 616,037 - -0.3 616,037 - -1.0 616,037 - -1.8 616,037 - +0.0 616,037 - -1.0 616,058 + -0.9 616,058 + +0.2 616,059 - +0.3 616,059 - +0.6 616,059 - +0.3 616,059 - +0.4 616,070 + -0.4 616,070 + +0.2 616,071 - +0.4 616,071 - +0.5 616,071 - -0.1 616,088 + -0.1 616,089 - -0.7 616,139 + SM_b20825 0.15 +0.7 616,140 - -1.1 616,191 + SM_b20825 0.22 -0.3 616,192 - SM_b20825 0.22 +0.9 616,290 - SM_b20825 0.35 +0.5 616,296 - SM_b20825 0.35 -0.1 616,296 - SM_b20825 0.35 +0.4 616,478 + SM_b20825 0.59 +0.1 616,479 - SM_b20825 0.59 +0.4 616,479 - SM_b20825 0.59 -0.8 616,535 + SM_b20825 0.66 -1.1 616,536 - SM_b20825 0.67 -0.6 616,554 + SM_b20825 0.69 -1.1 616,554 + SM_b20825 0.69 +0.6 616,555 - SM_b20825 0.69 +0.4 616,555 - SM_b20825 0.69 -0.2 616,697 + SM_b20825 0.87 -2.1 616,698 - SM_b20825 0.88 +0.5 616,740 + -1.1 616,763 + +0.1 616,858 + +0.3
Or see this region's nucleotide sequence