Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20679 and SM_b20680 are separated by 5 nucleotides SM_b20680 and SM_b20681 are separated by 54 nucleotides SM_b20681 and SM_b20682 are separated by 169 nucleotides
SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592
_b20679
SM_b20680: SM_b20680 - hydroxypyruvate isomerase, at 1,481,598 to 1,482,413
_b20680
SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252
_b20681
SM_b20682: SM_b20682 - IclR family transcriptional regulator, at 1,484,422 to 1,485,243
_b20682
Position (kb)
1482
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1 at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.693 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.805 kb on + strand, within SM_b20680 at 1481.836 kb on + strand, within SM_b20680 at 1481.837 kb on - strand, within SM_b20680 at 1481.875 kb on + strand, within SM_b20680 at 1481.885 kb on - strand, within SM_b20680 at 1481.900 kb on + strand, within SM_b20680 at 1482.076 kb on - strand, within SM_b20680 at 1482.136 kb on + strand, within SM_b20680 at 1482.137 kb on - strand, within SM_b20680 at 1482.727 kb on + strand, within SM_b20681 at 1482.829 kb on + strand at 1482.857 kb on - strand, within SM_b20681 at 1482.857 kb on - strand, within SM_b20681 at 1482.913 kb on + strand, within SM_b20681 at 1482.914 kb on - strand, within SM_b20681 at 1483.033 kb on + strand, within SM_b20681 at 1483.088 kb on - strand, within SM_b20681 at 1483.088 kb on - strand, within SM_b20681 at 1483.126 kb on + strand, within SM_b20681 at 1483.378 kb on + strand, within SM_b20681 at 1483.378 kb on + strand, within SM_b20681 at 1483.703 kb on - strand, within SM_b20681 at 1483.721 kb on - strand, within SM_b20681 at 1483.990 kb on + strand, within SM_b20681 at 1484.034 kb on + strand, within SM_b20681 at 1484.035 kb on - strand, within SM_b20681 at 1484.072 kb on - strand, within SM_b20681 at 1484.116 kb on - strand at 1484.116 kb on - strand at 1484.775 kb on + strand, within SM_b20682 at 1484.784 kb on - strand, within SM_b20682 at 1484.784 kb on - strand, within SM_b20682 at 1484.964 kb on + strand, within SM_b20682 at 1485.098 kb on - strand, within SM_b20682
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,481,583 + -0.4 1,481,583 + -1.1 1,481,583 + -0.3 1,481,599 + +0.4 1,481,599 + -0.2 1,481,599 + +0.7 1,481,599 + +1.4 1,481,600 - -0.4 1,481,600 - -0.3 1,481,600 - -2.5 1,481,693 - SM_b20680 0.12 -0.7 1,481,753 - SM_b20680 0.19 +0.4 1,481,753 - SM_b20680 0.19 -0.5 1,481,805 + SM_b20680 0.25 +0.1 1,481,836 + SM_b20680 0.29 -0.2 1,481,837 - SM_b20680 0.29 +0.4 1,481,875 + SM_b20680 0.34 -0.0 1,481,885 - SM_b20680 0.35 +0.3 1,481,900 + SM_b20680 0.37 +0.0 1,482,076 - SM_b20680 0.59 +0.5 1,482,136 + SM_b20680 0.66 -0.2 1,482,137 - SM_b20680 0.66 +0.0 1,482,727 + SM_b20681 0.15 -1.2 1,482,829 + +1.2 1,482,857 - SM_b20681 0.22 -0.6 1,482,857 - SM_b20681 0.22 -0.2 1,482,913 + SM_b20681 0.25 +0.7 1,482,914 - SM_b20681 0.25 -0.7 1,483,033 + SM_b20681 0.32 -0.5 1,483,088 - SM_b20681 0.35 -0.3 1,483,088 - SM_b20681 0.35 -1.4 1,483,126 + SM_b20681 0.37 +0.1 1,483,378 + SM_b20681 0.51 -0.3 1,483,378 + SM_b20681 0.51 -0.2 1,483,703 - SM_b20681 0.69 -0.2 1,483,721 - SM_b20681 0.70 +0.2 1,483,990 + SM_b20681 0.85 -0.2 1,484,034 + SM_b20681 0.88 -1.2 1,484,035 - SM_b20681 0.88 +0.5 1,484,072 - SM_b20681 0.90 -0.8 1,484,116 - -0.8 1,484,116 - -0.6 1,484,775 + SM_b20682 0.43 +0.1 1,484,784 - SM_b20682 0.44 +0.3 1,484,784 - SM_b20682 0.44 -0.2 1,484,964 + SM_b20682 0.66 -0.2 1,485,098 - SM_b20682 0.82 +0.8
Or see this region's nucleotide sequence