Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20579

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20577 and SM_b20578 are separated by 16 nucleotidesSM_b20578 and SM_b20579 overlap by 4 nucleotidesSM_b20579 and SM_b20580 are separated by 94 nucleotides SM_b20577: SM_b20577 - protocatechuate 3,4-dioxygenase subunit beta, at 1,591,223 to 1,591,984 _b20577 SM_b20578: SM_b20578 - gamma carboxymuconolactone decarboxylase, at 1,592,001 to 1,592,408 _b20578 SM_b20579: SM_b20579 - beta-ketoadipate enol-lactone hydrolase, at 1,592,405 to 1,593,211 _b20579 SM_b20580: SM_b20580 - LysR family transcriptional regulator, at 1,593,306 to 1,594,247 _b20580 Position (kb) 1592 1593 1594Strain fitness (log2 ratio) -1 0 1 2 3 4at 1591.416 kb on + strand, within SM_b20577at 1591.416 kb on + strand, within SM_b20577at 1591.416 kb on + strand, within SM_b20577at 1591.416 kb on + strand, within SM_b20577at 1591.472 kb on - strand, within SM_b20577at 1591.513 kb on - strand, within SM_b20577at 1591.759 kb on + strand, within SM_b20577at 1591.759 kb on + strand, within SM_b20577at 1592.086 kb on + strand, within SM_b20578at 1592.086 kb on + strand, within SM_b20578at 1592.087 kb on - strand, within SM_b20578at 1592.087 kb on - strand, within SM_b20578at 1592.087 kb on - strand, within SM_b20578at 1592.117 kb on + strand, within SM_b20578at 1592.118 kb on - strand, within SM_b20578at 1592.343 kb on + strand, within SM_b20578at 1592.344 kb on - strand, within SM_b20578at 1592.487 kb on - strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.529 kb on - strand, within SM_b20579at 1593.006 kb on + strand, within SM_b20579at 1593.174 kb on + strandat 1593.267 kb on - strandat 1593.299 kb on - strandat 1593.323 kb on + strandat 1593.892 kb on - strand, within SM_b20580at 1594.139 kb on + strand, within SM_b20580at 1594.140 kb on - strand, within SM_b20580at 1594.140 kb on - strand, within SM_b20580

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,591,416 + SM_b20577 0.25 -0.2
1,591,416 + SM_b20577 0.25 +1.7
1,591,416 + SM_b20577 0.25 -0.6
1,591,416 + SM_b20577 0.25 -0.2
1,591,472 - SM_b20577 0.33 +4.4
1,591,513 - SM_b20577 0.38 +0.4
1,591,759 + SM_b20577 0.70 +0.1
1,591,759 + SM_b20577 0.70 -0.6
1,592,086 + SM_b20578 0.21 -0.7
1,592,086 + SM_b20578 0.21 +0.6
1,592,087 - SM_b20578 0.21 +0.8
1,592,087 - SM_b20578 0.21 -0.4
1,592,087 - SM_b20578 0.21 +0.8
1,592,117 + SM_b20578 0.28 -0.2
1,592,118 - SM_b20578 0.29 -0.1
1,592,343 + SM_b20578 0.84 -0.3
1,592,344 - SM_b20578 0.84 +0.8
1,592,487 - SM_b20579 0.10 -0.4
1,592,488 + SM_b20579 0.10 -0.2
1,592,488 + SM_b20579 0.10 +0.3
1,592,488 + SM_b20579 0.10 -0.3
1,592,489 - SM_b20579 0.10 -0.5
1,592,489 - SM_b20579 0.10 -1.3
1,592,489 - SM_b20579 0.10 -0.5
1,592,489 - SM_b20579 0.10 +0.2
1,592,489 - SM_b20579 0.10 -0.1
1,592,489 - SM_b20579 0.10 -1.6
1,592,489 - SM_b20579 0.10 -0.6
1,592,489 - SM_b20579 0.10 +0.5
1,592,529 - SM_b20579 0.15 -0.3
1,593,006 + SM_b20579 0.74 -0.1
1,593,174 + -0.2
1,593,267 - +0.0
1,593,299 - +0.0
1,593,323 + +0.8
1,593,892 - SM_b20580 0.62 -0.1
1,594,139 + SM_b20580 0.88 +0.1
1,594,140 - SM_b20580 0.89 -0.6
1,594,140 - SM_b20580 0.89 -0.5

Or see this region's nucleotide sequence