Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20407 and SM_b20408 are separated by 3 nucleotides SM_b20408 and SM_b20409 overlap by 4 nucleotides SM_b20409 and SM_b20410 are separated by 68 nucleotides
SM_b20407: SM_b20407 - 5-oxoprolinase, at 422,142 to 424,343
_b20407
SM_b20408: SM_b20408 - hypothetical protein, at 424,347 to 424,844
_b20408
SM_b20409: SM_b20409 - 3-oxoacyl-ACP reductase, at 424,841 to 425,671
_b20409
SM_b20410: SM_b20410 - glycine-betaine-binding protein, at 425,740 to 426,678
_b20410
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 423.522 kb on + strand, within SM_b20407 at 423.522 kb on + strand, within SM_b20407 at 423.522 kb on + strand, within SM_b20407 at 423.522 kb on + strand, within SM_b20407 at 423.523 kb on - strand, within SM_b20407 at 423.523 kb on - strand, within SM_b20407 at 423.523 kb on - strand, within SM_b20407 at 423.523 kb on - strand, within SM_b20407 at 423.591 kb on + strand, within SM_b20407 at 423.591 kb on + strand, within SM_b20407 at 423.591 kb on + strand, within SM_b20407 at 423.591 kb on + strand, within SM_b20407 at 423.592 kb on - strand, within SM_b20407 at 423.592 kb on - strand, within SM_b20407 at 423.701 kb on - strand, within SM_b20407 at 423.840 kb on - strand, within SM_b20407 at 423.882 kb on + strand, within SM_b20407 at 423.882 kb on + strand, within SM_b20407 at 423.915 kb on + strand, within SM_b20407 at 423.915 kb on + strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.916 kb on - strand, within SM_b20407 at 423.960 kb on + strand, within SM_b20407 at 423.960 kb on + strand, within SM_b20407 at 423.962 kb on + strand, within SM_b20407 at 423.963 kb on - strand, within SM_b20407 at 423.963 kb on - strand, within SM_b20407 at 424.360 kb on - strand at 424.360 kb on - strand at 424.431 kb on + strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.432 kb on - strand, within SM_b20408 at 424.433 kb on + strand, within SM_b20408 at 424.433 kb on + strand, within SM_b20408 at 424.434 kb on - strand, within SM_b20408 at 424.458 kb on + strand, within SM_b20408 at 424.591 kb on - strand, within SM_b20408 at 424.610 kb on + strand, within SM_b20408 at 424.948 kb on - strand, within SM_b20409 at 424.948 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.306 kb on - strand, within SM_b20409 at 425.307 kb on + strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.351 kb on + strand, within SM_b20409 at 425.577 kb on - strand, within SM_b20409 at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.644 kb on - strand at 425.644 kb on - strand at 425.711 kb on + strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 423,522 + SM_b20407 0.63 -0.0 423,522 + SM_b20407 0.63 +1.2 423,522 + SM_b20407 0.63 +0.3 423,522 + SM_b20407 0.63 -0.6 423,523 - SM_b20407 0.63 +0.1 423,523 - SM_b20407 0.63 +1.6 423,523 - SM_b20407 0.63 -0.3 423,523 - SM_b20407 0.63 +0.3 423,591 + SM_b20407 0.66 -0.3 423,591 + SM_b20407 0.66 -0.5 423,591 + SM_b20407 0.66 +0.0 423,591 + SM_b20407 0.66 -0.7 423,592 - SM_b20407 0.66 +0.7 423,592 - SM_b20407 0.66 +0.7 423,701 - SM_b20407 0.71 -0.1 423,840 - SM_b20407 0.77 -0.5 423,882 + SM_b20407 0.79 -0.1 423,882 + SM_b20407 0.79 +0.2 423,915 + SM_b20407 0.81 -1.9 423,915 + SM_b20407 0.81 -0.1 423,916 - SM_b20407 0.81 -0.3 423,916 - SM_b20407 0.81 -0.7 423,916 - SM_b20407 0.81 +0.7 423,916 - SM_b20407 0.81 -0.1 423,916 - SM_b20407 0.81 +0.1 423,916 - SM_b20407 0.81 +0.1 423,916 - SM_b20407 0.81 -0.2 423,916 - SM_b20407 0.81 -0.5 423,960 + SM_b20407 0.83 +0.2 423,960 + SM_b20407 0.83 +0.2 423,962 + SM_b20407 0.83 -0.5 423,963 - SM_b20407 0.83 +0.3 423,963 - SM_b20407 0.83 -0.1 424,360 - +0.6 424,360 - +0.2 424,431 + SM_b20408 0.17 -1.2 424,432 - SM_b20408 0.17 -0.9 424,432 - SM_b20408 0.17 -0.1 424,432 - SM_b20408 0.17 +0.1 424,432 - SM_b20408 0.17 +1.5 424,432 - SM_b20408 0.17 -1.2 424,432 - SM_b20408 0.17 +0.4 424,433 + SM_b20408 0.17 -0.8 424,433 + SM_b20408 0.17 -1.4 424,434 - SM_b20408 0.17 -0.3 424,458 + SM_b20408 0.22 -1.2 424,591 - SM_b20408 0.49 +0.3 424,610 + SM_b20408 0.53 +0.1 424,948 - SM_b20409 0.13 +0.1 424,948 - SM_b20409 0.13 -0.6 425,061 - SM_b20409 0.26 -0.3 425,061 - SM_b20409 0.26 -0.0 425,205 + SM_b20409 0.44 -1.1 425,205 + SM_b20409 0.44 -0.5 425,205 + SM_b20409 0.44 -0.4 425,206 - SM_b20409 0.44 +0.9 425,206 - SM_b20409 0.44 -2.0 425,305 + SM_b20409 0.56 -0.1 425,305 + SM_b20409 0.56 +0.9 425,306 - SM_b20409 0.56 +0.1 425,307 + SM_b20409 0.56 -0.4 425,308 - SM_b20409 0.56 +0.2 425,308 - SM_b20409 0.56 -0.7 425,351 + SM_b20409 0.61 +0.6 425,577 - SM_b20409 0.89 -0.3 425,643 + +0.3 425,643 + -0.1 425,643 + +0.1 425,643 + -1.0 425,644 - +0.1 425,644 - -0.3 425,711 + +0.3 425,712 - +0.3 425,712 - -0.7 425,712 - -0.3 425,712 - +0.1 425,712 - -1.8 425,720 + +0.3 425,720 + +1.2 425,720 + -0.1 425,721 - -0.2
Or see this region's nucleotide sequence