Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20019 and SM_b20020 are separated by 2 nucleotides SM_b20020 and SM_b20021 are separated by 116 nucleotides
SM_b20019: SM_b20019 - dihydrolipoamide succinyltransferase, at 26,206 to 27,342
_b20019
SM_b20020: SM_b20020 - pyruvate dehydrogenase E1 component, subunits alpha and beta, at 27,345 to 29,423
_b20020
SM_b20021: SM_b20021 - transcriptional regulator, at 29,540 to 30,010
_b20021
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.622 kb on + strand, within SM_b20019 at 26.623 kb on - strand, within SM_b20019 at 26.718 kb on - strand, within SM_b20019 at 26.726 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 27.041 kb on + strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.378 kb on + strand at 28.057 kb on + strand, within SM_b20020 at 28.058 kb on - strand, within SM_b20020 at 28.058 kb on - strand, within SM_b20020 at 28.533 kb on - strand, within SM_b20020 at 28.534 kb on + strand, within SM_b20020 at 28.534 kb on + strand, within SM_b20020 at 28.534 kb on + strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.597 kb on + strand, within SM_b20020 at 28.597 kb on + strand, within SM_b20020 at 28.781 kb on + strand, within SM_b20020 at 28.782 kb on - strand, within SM_b20020 at 28.843 kb on + strand, within SM_b20020 at 28.844 kb on - strand, within SM_b20020 at 28.844 kb on - strand, within SM_b20020 at 28.844 kb on - strand, within SM_b20020 at 28.982 kb on - strand, within SM_b20020 at 29.016 kb on - strand, within SM_b20020 at 29.016 kb on - strand, within SM_b20020 at 29.017 kb on + strand, within SM_b20020 at 29.194 kb on + strand, within SM_b20020 at 29.278 kb on + strand at 29.540 kb on - strand at 29.584 kb on - strand at 29.843 kb on + strand, within SM_b20021 at 29.987 kb on + strand at 29.987 kb on + strand at 29.988 kb on - strand at 30.008 kb on + strand at 30.170 kb on - strand at 30.170 kb on - strand at 30.189 kb on + strand at 30.189 kb on + strand at 30.189 kb on + strand at 30.190 kb on - strand at 30.196 kb on + strand at 30.196 kb on + strand at 30.197 kb on - strand at 30.370 kb on + strand at 30.371 kb on - strand at 30.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 26,615 - SM_b20019 0.36 -0.1 26,615 - SM_b20019 0.36 +0.2 26,615 - SM_b20019 0.36 -0.2 26,622 + SM_b20019 0.37 -0.5 26,623 - SM_b20019 0.37 -0.7 26,718 - SM_b20019 0.45 +0.3 26,726 + SM_b20019 0.46 -0.0 26,850 + SM_b20019 0.57 -0.4 26,850 + SM_b20019 0.57 +0.2 26,851 - SM_b20019 0.57 -0.8 26,851 - SM_b20019 0.57 -0.1 26,851 - SM_b20019 0.57 -0.1 26,888 - SM_b20019 0.60 +0.1 26,888 - SM_b20019 0.60 -0.5 27,041 + SM_b20019 0.73 +0.3 27,042 - SM_b20019 0.74 -0.4 27,042 - SM_b20019 0.74 +0.1 27,378 + -2.1 28,057 + SM_b20020 0.34 -1.4 28,058 - SM_b20020 0.34 -2.6 28,058 - SM_b20020 0.34 -0.2 28,533 - SM_b20020 0.57 -1.0 28,534 + SM_b20020 0.57 +0.5 28,534 + SM_b20020 0.57 -0.3 28,534 + SM_b20020 0.57 -0.2 28,535 - SM_b20020 0.57 -0.1 28,535 - SM_b20020 0.57 -0.0 28,535 - SM_b20020 0.57 +0.1 28,535 - SM_b20020 0.57 -1.8 28,535 - SM_b20020 0.57 -0.8 28,535 - SM_b20020 0.57 +0.2 28,535 - SM_b20020 0.57 -1.3 28,597 + SM_b20020 0.60 -0.2 28,597 + SM_b20020 0.60 +0.1 28,781 + SM_b20020 0.69 +0.8 28,782 - SM_b20020 0.69 +0.8 28,843 + SM_b20020 0.72 -0.3 28,844 - SM_b20020 0.72 +0.0 28,844 - SM_b20020 0.72 -0.1 28,844 - SM_b20020 0.72 -0.8 28,982 - SM_b20020 0.79 -1.3 29,016 - SM_b20020 0.80 -0.7 29,016 - SM_b20020 0.80 -1.4 29,017 + SM_b20020 0.80 +2.2 29,194 + SM_b20020 0.89 +0.9 29,278 + -0.2 29,540 - -2.6 29,584 - +0.9 29,843 + SM_b20021 0.64 +0.9 29,987 + -0.7 29,987 + -1.5 29,988 - +0.9 30,008 + -0.6 30,170 - +0.1 30,170 - +0.8 30,189 + -0.7 30,189 + +1.1 30,189 + -0.2 30,190 - +0.9 30,196 + +0.4 30,196 + +0.5 30,197 - +0.9 30,370 + +0.9 30,371 - -0.0 30,371 - +0.7
Or see this region's nucleotide sequence