Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4887

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
5,796,355	+		Psyr_4886	0.27	-1.7
5,796,355	+		Psyr_4886	0.27	-2.6
5,796,356	-		Psyr_4886	0.27	-0.8
5,796,356	-		Psyr_4886	0.27	-2.5
5,796,412	+		Psyr_4886	0.32	+2.6
5,796,412	+		Psyr_4886	0.32	+0.4
5,796,412	+		Psyr_4886	0.32	+0.6
5,796,412	+		Psyr_4886	0.32	-0.8
5,796,412	+		Psyr_4886	0.32	-2.2
5,796,412	+		Psyr_4886	0.32	-2.0
5,796,412	+		Psyr_4886	0.32	+0.4
5,796,413	-		Psyr_4886	0.32	-2.3
5,796,413	-		Psyr_4886	0.32	-2.8
5,796,413	-		Psyr_4886	0.32	-1.9
5,796,415	+		Psyr_4886	0.32	+0.6
5,796,416	-		Psyr_4886	0.32	+2.2
5,796,416	-		Psyr_4886	0.32	-0.8
5,796,422	-		Psyr_4886	0.32	+0.4
5,796,422	-		Psyr_4886	0.32	-2.0
5,796,449	+		Psyr_4886	0.34	+2.6
5,796,450	-		Psyr_4886	0.35	+0.9
5,796,616	+		Psyr_4886	0.47	+1.2
5,796,616	+		Psyr_4886	0.47	-0.3
5,796,616	+		Psyr_4886	0.47	-1.1
5,796,616	+		Psyr_4886	0.47	+1.6
5,796,616	+		Psyr_4886	0.47	-0.2
5,796,616	+		Psyr_4886	0.47	+0.6
5,796,616	+		Psyr_4886	0.47	-2.0
5,796,617	-		Psyr_4886	0.47	-0.2
5,796,617	-		Psyr_4886	0.47	+0.7
5,796,617	-		Psyr_4886	0.47	-3.1
5,796,825	+		Psyr_4886	0.63	-1.8
5,797,049	+		Psyr_4886	0.80	+3.7
5,797,049	+		Psyr_4886	0.80	+0.6
5,797,049	+		Psyr_4886	0.80	+0.1
5,797,049	+		Psyr_4886	0.80	-0.5
5,797,049	+		Psyr_4886	0.80	-0.1
5,797,049	+		Psyr_4886	0.80	-2.5
5,797,049	+		Psyr_4886	0.80	-0.4
5,797,049	+		Psyr_4886	0.80	-1.8
5,797,050	-		Psyr_4886	0.80	-2.3
5,797,050	-		Psyr_4886	0.80	-0.3
5,797,050	-		Psyr_4886	0.80	-2.8
5,797,050	-		Psyr_4886	0.80	+0.5
5,797,050	-		Psyr_4886	0.80	-2.1
5,797,135	+		Psyr_4886	0.86	+1.2
5,797,190	+				+0.3
5,797,190	+				-0.2
5,797,190	+				+0.7
5,797,190	+				+0.3
5,797,190	+				-2.8
5,797,190	+				+0.5
5,797,190	+				-1.6
5,797,191	-				-0.3
5,797,191	-				-0.2
5,797,191	-				-2.9
5,797,191	-				+0.8
5,797,191	-				-2.3
5,797,191	-				-0.5
5,797,225	-				-1.8
5,797,225	-				-1.0
5,797,252	+				+0.6
5,797,252	+				-0.9
5,797,252	+				-0.6
5,797,252	+				+0.7
5,797,252	+				+0.2
5,797,252	+				+1.6
5,797,253	-				-4.0
5,797,253	-				-3.1
5,797,253	-				+0.6
5,797,253	-				+1.0
5,797,253	-				-0.2
5,797,253	-				-2.8
5,797,261	-				-2.6
5,797,315	+				+0.7
5,797,315	+				-1.5
5,797,329	+				-2.2
5,797,329	+				+0.9
5,797,330	-				+0.9
5,797,330	-				+0.2
5,797,335	+				+0.5
5,797,555	+		Psyr_4887	0.15	-3.0
5,797,555	+		Psyr_4887	0.15	-0.4
5,797,555	+		Psyr_4887	0.15	-2.0
5,797,556	-		Psyr_4887	0.15	-0.0
5,797,556	-		Psyr_4887	0.15	-3.7
5,797,636	+		Psyr_4887	0.21	-1.4
5,797,636	+		Psyr_4887	0.21	-1.3
5,797,636	+		Psyr_4887	0.21	-4.1
5,797,637	-		Psyr_4887	0.21	-2.9
5,797,990	+		Psyr_4887	0.48	-2.4
5,797,990	+		Psyr_4887	0.48	-1.3
5,797,991	-		Psyr_4887	0.48	-0.8
5,797,991	-		Psyr_4887	0.48	-0.8
5,797,991	-		Psyr_4887	0.48	-3.3
5,797,991	-		Psyr_4887	0.48	+0.5
5,798,176	+		Psyr_4887	0.62	-3.4
5,798,176	+		Psyr_4887	0.62	-2.6
5,798,177	-		Psyr_4887	0.62	-1.8
5,798,196	+		Psyr_4887	0.63	-1.3
5,798,196	+		Psyr_4887	0.63	-2.5
5,798,197	-		Psyr_4887	0.63	-2.7
5,798,422	+		Psyr_4887	0.80	-3.6
5,798,422	+		Psyr_4887	0.80	-2.4
5,798,422	+		Psyr_4887	0.80	-3.6
5,798,422	+		Psyr_4887	0.80	+0.2
5,798,422	+		Psyr_4887	0.80	-2.2
5,798,422	+		Psyr_4887	0.80	-2.5
5,798,422	+		Psyr_4887	0.80	+1.2
5,798,422	+		Psyr_4887	0.80	-3.6
5,798,423	-		Psyr_4887	0.80	+3.3
5,798,423	-		Psyr_4887	0.80	-3.5
5,798,423	-		Psyr_4887	0.80	-3.5
5,798,423	-		Psyr_4887	0.80	-3.0
5,798,425	+		Psyr_4887	0.80	-1.6
5,798,425	+		Psyr_4887	0.80	-0.6
5,798,425	+		Psyr_4887	0.80	-2.8
5,798,425	+		Psyr_4887	0.80	-4.0
5,798,425	+		Psyr_4887	0.80	-2.6
5,798,426	-		Psyr_4887	0.80	-2.5
5,798,426	-		Psyr_4887	0.80	+1.7
5,798,426	-		Psyr_4887	0.80	-1.6
5,798,426	-		Psyr_4887	0.80	-2.9
5,798,480	+		Psyr_4887	0.84	-4.0
5,798,480	+		Psyr_4887	0.84	-2.6
5,798,480	+		Psyr_4887	0.84	-2.3
5,798,481	-		Psyr_4887	0.84	-2.0
5,798,481	-		Psyr_4887	0.84	-2.3
5,798,521	+		Psyr_4887	0.87	-0.6
5,798,521	+		Psyr_4887	0.87	-3.7
5,798,521	+		Psyr_4887	0.87	-3.2
5,798,521	+		Psyr_4887	0.87	-0.8
5,798,521	+		Psyr_4887	0.87	-2.0
5,798,521	+		Psyr_4887	0.87	-1.3
5,798,522	-		Psyr_4887	0.88	-3.1
5,798,522	-		Psyr_4887	0.88	-2.2
5,798,522	-		Psyr_4887	0.88	-3.4
5,798,670	+				-0.8
5,798,671	-				-1.3
5,798,712	-				+0.2
5,798,785	+		Psyr_4888	0.12	-0.3
5,798,786	-		Psyr_4888	0.12	+1.1
5,799,125	+		Psyr_4888	0.55	-0.6
5,799,125	+		Psyr_4888	0.55	-1.4
5,799,126	-		Psyr_4888	0.55	-0.2
5,799,126	-		Psyr_4888	0.55	-1.8
5,799,227	+		Psyr_4888	0.68	+1.0
5,799,227	+		Psyr_4888	0.68	-2.2
5,799,227	+		Psyr_4888	0.68	+1.0
5,799,227	+		Psyr_4888	0.68	+0.3
5,799,227	+		Psyr_4888	0.68	+0.3
5,799,228	-		Psyr_4888	0.68	-0.3
5,799,228	-		Psyr_4888	0.68	+0.9
5,799,228	-		Psyr_4888	0.68	-1.1
5,799,228	-		Psyr_4888	0.68	-0.5
5,799,228	-		Psyr_4888	0.68	+0.6
5,799,301	+		Psyr_4888	0.78	-0.4
5,799,301	+		Psyr_4888	0.78	-1.6
5,799,302	-		Psyr_4888	0.78	+0.7
5,799,302	-		Psyr_4888	0.78	-3.6
5,799,350	+		Psyr_4888	0.84	+1.0
5,799,466	+				-0.3
5,799,513	+				+0.6
5,799,513	+				-0.6
5,799,514	-				+2.7
5,799,514	-				+1.7
5,799,547	+				+0.1
5,799,547	+				+0.8
5,799,563	+				-2.4
5,799,617	+				+0.2
5,799,618	-				-2.2
5,799,642	+				-3.0
5,799,643	-				-0.6
5,799,643	-				+0.0
5,799,677	+				-0.3
5,799,678	-				-1.0
5,799,678	-				+1.5
5,799,678	-				-1.7
5,799,678	-				+0.2