Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4867

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
5,775,438	+		Psyr_4866	0.35	-0.5
5,775,439	-		Psyr_4866	0.35	+1.0
5,775,439	-		Psyr_4866	0.35	-1.5
5,775,443	-		Psyr_4866	0.35	-0.6
5,775,443	-		Psyr_4866	0.35	-0.6
5,775,493	+		Psyr_4866	0.39	+1.8
5,775,494	-		Psyr_4866	0.39	+1.2
5,775,494	-		Psyr_4866	0.39	-0.8
5,775,521	+		Psyr_4866	0.41	+0.8
5,775,602	-		Psyr_4866	0.47	-2.1
5,775,763	+		Psyr_4866	0.59	-3.3
5,775,764	-		Psyr_4866	0.59	-2.2
5,775,820	+		Psyr_4866	0.63	-2.4
5,775,820	+		Psyr_4866	0.63	+1.3
5,775,820	+		Psyr_4866	0.63	+0.5
5,775,820	+		Psyr_4866	0.63	-1.2
5,775,820	+		Psyr_4866	0.63	+4.1
5,775,820	+		Psyr_4866	0.63	+4.5
5,775,820	+		Psyr_4866	0.63	-2.0
5,775,820	+		Psyr_4866	0.63	+0.6
5,775,820	+		Psyr_4866	0.63	-1.7
5,775,820	+		Psyr_4866	0.63	-3.6
5,775,820	+		Psyr_4866	0.63	-0.6
5,775,820	+		Psyr_4866	0.63	+1.2
5,775,821	-		Psyr_4866	0.63	-2.2
5,775,821	-		Psyr_4866	0.63	-0.1
5,775,821	-		Psyr_4866	0.63	-1.9
5,775,821	-		Psyr_4866	0.63	+1.3
5,775,821	-		Psyr_4866	0.63	-2.1
5,775,821	-		Psyr_4866	0.63	+0.0
5,775,821	-		Psyr_4866	0.63	-0.9
5,775,821	-		Psyr_4866	0.63	+0.1
5,775,821	-		Psyr_4866	0.63	-2.9
5,775,821	-		Psyr_4866	0.63	-1.8
5,775,821	-		Psyr_4866	0.63	-0.7
5,775,821	-		Psyr_4866	0.63	+0.0
5,776,069	+		Psyr_4866	0.81	-2.1
5,776,069	+		Psyr_4866	0.81	-1.0
5,776,069	+		Psyr_4866	0.81	-1.7
5,776,069	+		Psyr_4866	0.81	+1.1
5,776,069	+		Psyr_4866	0.81	-2.3
5,776,069	+		Psyr_4866	0.81	+0.9
5,776,069	+		Psyr_4866	0.81	-2.2
5,776,070	-		Psyr_4866	0.81	+1.3
5,776,070	-		Psyr_4866	0.81	-0.3
5,776,070	-		Psyr_4866	0.81	-1.1
5,776,070	-		Psyr_4866	0.81	+1.1
5,776,070	-		Psyr_4866	0.81	-1.0
5,776,072	+		Psyr_4866	0.81	+2.1
5,776,073	-		Psyr_4866	0.81	+4.9
5,776,195	+				-0.1
5,776,195	+				+1.3
5,776,195	+				-0.8
5,776,249	+				-0.2
5,776,674	+		Psyr_4867	0.21	+0.4
5,776,674	+		Psyr_4867	0.21	-2.8
5,776,674	+		Psyr_4867	0.21	-1.3
5,776,930	+		Psyr_4867	0.39	+0.1
5,776,930	+		Psyr_4867	0.39	-1.9
5,776,930	+		Psyr_4867	0.39	+3.6
5,777,153	-		Psyr_4867	0.56	-2.3
5,777,187	+		Psyr_4867	0.58	+0.5
5,777,187	+		Psyr_4867	0.58	+0.7
5,777,188	-		Psyr_4867	0.58	-0.9
5,777,188	-		Psyr_4867	0.58	+1.4
5,777,188	-		Psyr_4867	0.58	-0.6
5,777,322	+		Psyr_4867	0.68	-1.0
5,777,323	-		Psyr_4867	0.68	-2.9
5,777,436	+		Psyr_4867	0.77	+0.3
5,777,436	+		Psyr_4867	0.77	+0.7
5,777,436	+		Psyr_4867	0.77	-3.8
5,777,437	-		Psyr_4867	0.77	+1.9
5,777,437	-		Psyr_4867	0.77	+1.6
5,777,437	-		Psyr_4867	0.77	-0.0
5,777,437	-		Psyr_4867	0.77	+0.4
5,777,437	-		Psyr_4867	0.77	-2.1
5,777,437	-		Psyr_4867	0.77	+1.3
5,777,487	+		Psyr_4867	0.80	-2.4
5,777,487	+		Psyr_4867	0.80	+0.7
5,777,487	+		Psyr_4867	0.80	-1.7
5,777,487	+		Psyr_4867	0.80	+0.5
5,777,487	+		Psyr_4867	0.80	+2.3
5,777,487	+		Psyr_4867	0.80	-2.4
5,777,487	+		Psyr_4867	0.80	+0.1
5,777,488	-		Psyr_4867	0.81	-2.4
5,777,488	-		Psyr_4867	0.81	-0.4
5,777,488	-		Psyr_4867	0.81	+1.8
5,777,547	+		Psyr_4867	0.85	+2.1
5,777,548	-		Psyr_4867	0.85	-1.6
5,777,548	-		Psyr_4867	0.85	-1.6
5,777,548	-		Psyr_4867	0.85	-0.0
5,777,548	-		Psyr_4867	0.85	+1.9
5,777,550	+		Psyr_4867	0.85	-1.6
5,777,550	+		Psyr_4867	0.85	+1.5
5,777,550	+		Psyr_4867	0.85	-0.2
5,777,550	+		Psyr_4867	0.85	+0.2
5,777,550	+		Psyr_4867	0.85	+1.8
5,777,550	+		Psyr_4867	0.85	+1.8
5,777,550	+		Psyr_4867	0.85	+2.5
5,777,551	-		Psyr_4867	0.85	+1.3
5,777,551	-		Psyr_4867	0.85	+2.9
5,777,551	-		Psyr_4867	0.85	+0.8
5,777,551	-		Psyr_4867	0.85	+1.4
5,777,551	-		Psyr_4867	0.85	-2.8
5,777,551	-		Psyr_4867	0.85	-1.7
5,777,551	-		Psyr_4867	0.85	+0.2
5,777,551	-		Psyr_4867	0.85	+0.4
5,777,551	-		Psyr_4867	0.85	+0.4
5,777,551	-		Psyr_4867	0.85	-2.6
5,777,551	-		Psyr_4867	0.85	-0.8
5,777,551	-		Psyr_4867	0.85	-0.2
5,777,554	+		Psyr_4867	0.85	+3.0
5,777,555	-		Psyr_4867	0.85	-3.3
5,777,564	+		Psyr_4867	0.86	+0.5
5,777,565	-		Psyr_4867	0.86	-1.8
5,777,565	-		Psyr_4867	0.86	-3.4
5,777,565	-		Psyr_4867	0.86	+2.1
5,777,568	+		Psyr_4867	0.86	-0.9
5,777,568	+		Psyr_4867	0.86	+0.9
5,777,568	+		Psyr_4867	0.86	+0.9
5,777,569	-		Psyr_4867	0.86	-1.5
5,777,569	-		Psyr_4867	0.86	+0.3
5,777,569	-		Psyr_4867	0.86	-1.0
5,777,746	+				+2.7
5,777,746	+				+0.1
5,777,747	-				+1.4
5,777,747	-				+1.0
5,777,747	-				-0.4
5,777,752	+				+1.3
5,777,752	+				+0.4
5,777,752	+				+0.8
5,777,752	+				-2.9
5,777,752	+				+0.9
5,777,752	+				-4.0
5,777,752	+				-4.0
5,777,752	+				+1.9
5,777,752	+				-1.9
5,777,752	+				-1.7
5,777,753	-				+1.4
5,777,753	-				-0.7
5,777,753	-				-1.9
5,777,753	-				-0.9
5,777,753	-				-0.2
5,777,753	-				+1.7
5,777,753	-				-0.8
5,777,753	-				-0.8
5,777,756	+				+1.0
5,777,756	+				+1.5
5,777,756	+				+1.0
5,777,756	+				-2.8
5,777,756	+				-1.0
5,777,756	+				-0.8
5,777,757	-				-0.7
5,777,757	-				+0.0
5,777,769	+				+1.0
5,777,770	-				-2.1
5,777,770	-				-1.0
5,777,818	+				+3.0
5,777,818	+				-1.7
5,777,818	+				-0.3
5,777,818	+				-0.3
5,777,818	+				+1.5
5,777,818	+				+0.6
5,777,819	-				-0.2
5,777,819	-				-0.6
5,777,819	-				+1.8
5,777,819	-				-0.7
5,777,819	-				-2.4
5,777,819	-				-0.2
5,777,819	-				+0.5
5,777,819	-				+1.4
5,777,819	-				-0.8
5,777,819	-				+0.4
5,777,819	-				-1.6
5,777,819	-				+0.8
5,777,819	-				-2.3
5,777,819	-				-1.2
5,777,909	+				-0.9
5,777,911	+				+0.9
5,777,911	+				-1.6
5,777,912	-				-0.9
5,777,917	+				+0.8
5,777,918	-				-1.0
5,777,918	-				-1.8
5,778,027	+				+1.0
5,778,169	+				+1.6
5,778,169	+				+0.6
5,778,170	-				-0.6
5,778,170	-				-2.1
5,778,215	+				-2.1
5,778,215	+				+1.3
5,778,216	-				-0.6
5,778,233	+				+1.5
5,778,234	-				-1.4
5,778,419	+				-0.0
5,778,419	+				+0.5
5,778,419	+				-1.9
5,778,420	-				-2.2
5,778,442	+				-0.2
5,778,442	+				-2.7
5,778,442	+				+0.1
5,778,443	-				-0.4
5,778,443	-				-1.2
5,778,497	+		Psyr_4868	0.11	+1.8
5,778,498	-		Psyr_4868	0.11	-2.5
5,778,528	+		Psyr_4868	0.13	-1.9
5,778,528	+		Psyr_4868	0.13	-1.2
5,778,529	-		Psyr_4868	0.13	+0.4
5,778,541	+		Psyr_4868	0.14	-0.8
5,778,723	+		Psyr_4868	0.27	-0.9
5,778,723	+		Psyr_4868	0.27	-2.9
5,778,723	+		Psyr_4868	0.27	+0.2
5,778,723	+		Psyr_4868	0.27	-2.6
5,778,723	+		Psyr_4868	0.27	+0.2
5,778,724	-		Psyr_4868	0.27	-0.2
5,778,724	-		Psyr_4868	0.27	-1.2