Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4764 and Psyr_4765 are separated by 489 nucleotides Psyr_4765 and Psyr_4766 are separated by 99 nucleotides
Psyr_4764: Psyr_4764 - SAM-dependent methyltransferase, at 5,638,696 to 5,639,892
_4764
Psyr_4765: Psyr_4765 - TraX, at 5,640,382 to 5,641,128
_4765
Psyr_4766: Psyr_4766 - L-threonine aldolase, at 5,641,228 to 5,642,268
_4766
Position (kb) 5640
5641
5642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.851 kb on + strand at 5639.852 kb on - strand at 5639.945 kb on - strand at 5639.945 kb on - strand at 5639.950 kb on + strand at 5639.950 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.276 kb on + strand at 5640.276 kb on + strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.281 kb on - strand at 5640.281 kb on - strand at 5640.705 kb on - strand, within Psyr_4765 at 5640.899 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.002 kb on - strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.029 kb on - strand, within Psyr_4765 at 5641.029 kb on - strand, within Psyr_4765 at 5641.050 kb on + strand, within Psyr_4765 at 5641.051 kb on - strand, within Psyr_4765 at 5641.051 kb on - strand, within Psyr_4765 at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.129 kb on - strand at 5641.129 kb on - strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.192 kb on - strand at 5641.206 kb on - strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.265 kb on - strand at 5641.265 kb on - strand at 5641.265 kb on - strand at 5641.330 kb on + strand at 5641.330 kb on + strand at 5641.331 kb on - strand at 5641.331 kb on - strand at 5641.331 kb on - strand at 5641.462 kb on + strand, within Psyr_4766 at 5641.462 kb on + strand, within Psyr_4766 at 5641.463 kb on - strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.682 kb on - strand, within Psyr_4766
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,639,383 + Psyr_4764 0.57 +0.5 5,639,383 + Psyr_4764 0.57 +2.9 5,639,383 + Psyr_4764 0.57 -1.5 5,639,383 + Psyr_4764 0.57 -2.0 5,639,383 + Psyr_4764 0.57 -0.4 5,639,383 + Psyr_4764 0.57 +0.2 5,639,383 + Psyr_4764 0.57 -1.3 5,639,383 + Psyr_4764 0.57 -0.1 5,639,383 + Psyr_4764 0.57 -1.1 5,639,383 + Psyr_4764 0.57 +0.5 5,639,383 + Psyr_4764 0.57 -0.5 5,639,383 + Psyr_4764 0.57 +2.0 5,639,383 + Psyr_4764 0.57 -1.4 5,639,383 + Psyr_4764 0.57 -2.4 5,639,383 + Psyr_4764 0.57 -1.9 5,639,384 - Psyr_4764 0.57 +1.0 5,639,384 - Psyr_4764 0.57 +1.3 5,639,384 - Psyr_4764 0.57 +0.6 5,639,384 - Psyr_4764 0.57 +0.6 5,639,384 - Psyr_4764 0.57 +0.4 5,639,384 - Psyr_4764 0.57 +0.9 5,639,384 - Psyr_4764 0.57 -0.3 5,639,384 - Psyr_4764 0.57 -1.1 5,639,384 - Psyr_4764 0.57 +0.9 5,639,384 - +1.7 5,639,384 - Psyr_4764 0.57 -2.5 5,639,384 - Psyr_4764 0.57 +0.8 5,639,384 - Psyr_4764 0.57 -1.1 5,639,384 - Psyr_4764 0.57 -2.4 5,639,384 - Psyr_4764 0.57 +0.4 5,639,384 - Psyr_4764 0.57 +1.5 5,639,384 - Psyr_4764 0.57 +0.4 5,639,384 - Psyr_4764 0.57 +1.1 5,639,384 - Psyr_4764 0.57 -1.3 5,639,851 + +0.4 5,639,852 - +1.3 5,639,945 - -3.5 5,639,945 - -0.2 5,639,950 + -0.0 5,639,950 + +0.6 5,640,231 + +0.7 5,640,231 + +1.7 5,640,231 + +0.8 5,640,276 + +2.0 5,640,276 + +0.5 5,640,277 - -3.5 5,640,277 - -2.6 5,640,277 - -0.5 5,640,277 - -1.2 5,640,280 + +1.3 5,640,280 + +0.7 5,640,280 + +1.1 5,640,281 - -1.3 5,640,281 - -0.6 5,640,705 - Psyr_4765 0.43 +1.5 5,640,899 + Psyr_4765 0.69 -2.1 5,641,001 + Psyr_4765 0.83 +0.0 5,641,001 + Psyr_4765 0.83 -1.4 5,641,001 + Psyr_4765 0.83 +0.4 5,641,002 - Psyr_4765 0.83 -0.9 5,641,028 + Psyr_4765 0.86 -2.7 5,641,028 + Psyr_4765 0.86 -2.3 5,641,028 + Psyr_4765 0.86 +0.9 5,641,029 - Psyr_4765 0.87 -0.3 5,641,029 - Psyr_4765 0.87 -1.4 5,641,050 + Psyr_4765 0.89 +1.1 5,641,051 - Psyr_4765 0.90 -1.5 5,641,051 - Psyr_4765 0.90 -0.8 5,641,128 + +0.2 5,641,128 + +1.7 5,641,128 + +1.7 5,641,128 + -0.6 5,641,129 - +1.6 5,641,129 - -0.6 5,641,180 + +0.2 5,641,180 + +0.8 5,641,180 + -0.9 5,641,180 + +0.0 5,641,180 + +0.7 5,641,180 + +1.1 5,641,180 + -1.1 5,641,180 + +0.7 5,641,180 + -1.1 5,641,180 + -1.9 5,641,181 - +0.1 5,641,181 - -1.1 5,641,181 - -2.5 5,641,181 - +0.2 5,641,181 - +2.3 5,641,181 - +0.6 5,641,181 - +1.0 5,641,181 - -0.0 5,641,181 - -0.7 5,641,181 - +1.3 5,641,181 - -2.6 5,641,181 - -3.3 5,641,181 - -0.1 5,641,181 - +0.2 5,641,181 - -3.5 5,641,181 - -0.4 5,641,181 - +1.0 5,641,181 - -2.8 5,641,181 - -0.1 5,641,181 - +0.5 5,641,181 - -2.3 5,641,182 + -0.4 5,641,182 + -1.3 5,641,182 + +2.3 5,641,182 + +1.0 5,641,182 + -3.4 5,641,182 + +0.2 5,641,182 + -0.3 5,641,182 + -1.1 5,641,182 + -0.8 5,641,182 + -0.3 5,641,183 - +2.9 5,641,183 - -0.3 5,641,183 - +0.5 5,641,183 - +0.2 5,641,183 - +0.7 5,641,183 - +0.9 5,641,183 - +1.5 5,641,183 - +0.1 5,641,183 - -1.6 5,641,183 - -1.0 5,641,192 - -2.2 5,641,206 - -3.1 5,641,264 + +3.7 5,641,264 + -0.1 5,641,264 + -0.9 5,641,264 + -1.9 5,641,264 + -2.8 5,641,264 + -1.6 5,641,265 - -0.6 5,641,265 - +0.5 5,641,265 - +0.9 5,641,330 + +0.1 5,641,330 + +0.0 5,641,331 - -0.7 5,641,331 - +1.7 5,641,331 - +3.0 5,641,462 + Psyr_4766 0.22 -4.1 5,641,462 + Psyr_4766 0.22 -2.6 5,641,463 - Psyr_4766 0.23 -0.1 5,641,681 + Psyr_4766 0.44 -1.3 5,641,681 + Psyr_4766 0.44 -1.8 5,641,681 + Psyr_4766 0.44 +0.2 5,641,681 + Psyr_4766 0.44 +0.4 5,641,682 - Psyr_4766 0.44 +1.5
Or see this region's nucleotide sequence