Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4508 and Psyr_4509 are separated by 509 nucleotides Psyr_4509 and Psyr_4510 overlap by 8 nucleotides Psyr_4510 and Psyr_4511 overlap by 29 nucleotides
Psyr_4508: Psyr_4508 - Endo-1,4-beta-xylanase, at 5,371,848 to 5,372,960
_4508
Psyr_4509: Psyr_4509 - hypothetical protein, at 5,373,470 to 5,374,126
_4509
Psyr_4510: Psyr_4510 - hypothetical protein, at 5,374,119 to 5,374,988
_4510
Psyr_4511: Psyr_4511 - hypothetical protein, at 5,374,960 to 5,376,048
_4511
Position (kb) 5373
5374
5375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5372.560 kb on + strand, within Psyr_4508 at 5372.628 kb on - strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.739 kb on + strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.740 kb on - strand, within Psyr_4508 at 5372.741 kb on + strand, within Psyr_4508 at 5372.741 kb on + strand, within Psyr_4508 at 5372.748 kb on + strand, within Psyr_4508 at 5372.784 kb on - strand, within Psyr_4508 at 5372.784 kb on - strand, within Psyr_4508 at 5372.790 kb on - strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.792 kb on + strand, within Psyr_4508 at 5372.793 kb on - strand, within Psyr_4508 at 5372.958 kb on + strand at 5372.959 kb on - strand at 5372.987 kb on + strand at 5372.987 kb on + strand at 5372.987 kb on + strand at 5372.988 kb on - strand at 5372.988 kb on - strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.083 kb on + strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.084 kb on - strand at 5373.085 kb on + strand at 5373.086 kb on - strand at 5373.086 kb on - strand at 5373.086 kb on - strand at 5373.118 kb on - strand at 5373.118 kb on - strand at 5373.132 kb on + strand at 5373.134 kb on + strand at 5373.134 kb on + strand at 5373.135 kb on - strand at 5373.204 kb on + strand at 5373.230 kb on + strand at 5373.248 kb on + strand at 5373.316 kb on - strand at 5373.327 kb on + strand at 5373.361 kb on + strand at 5373.362 kb on - strand at 5373.368 kb on + strand at 5373.369 kb on - strand at 5373.455 kb on - strand at 5373.455 kb on - strand at 5373.455 kb on - strand at 5373.455 kb on - strand at 5373.455 kb on - strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.479 kb on + strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.480 kb on - strand at 5373.493 kb on + strand at 5373.494 kb on - strand at 5373.494 kb on - strand at 5373.494 kb on - strand at 5373.512 kb on - strand at 5373.549 kb on + strand, within Psyr_4509 at 5373.550 kb on - strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.560 kb on + strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.561 kb on - strand, within Psyr_4509 at 5373.608 kb on - strand, within Psyr_4509 at 5373.622 kb on - strand, within Psyr_4509 at 5373.657 kb on + strand, within Psyr_4509 at 5373.657 kb on + strand, within Psyr_4509 at 5373.657 kb on + strand, within Psyr_4509 at 5373.657 kb on + strand, within Psyr_4509 at 5373.657 kb on + strand, within Psyr_4509 at 5373.658 kb on - strand, within Psyr_4509 at 5373.658 kb on - strand, within Psyr_4509 at 5373.680 kb on + strand, within Psyr_4509 at 5373.680 kb on + strand, within Psyr_4509 at 5373.680 kb on + strand, within Psyr_4509 at 5373.681 kb on - strand, within Psyr_4509 at 5373.681 kb on - strand, within Psyr_4509 at 5373.744 kb on - strand, within Psyr_4509 at 5373.744 kb on - strand, within Psyr_4509 at 5373.744 kb on - strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.745 kb on + strand, within Psyr_4509 at 5373.746 kb on - strand, within Psyr_4509 at 5373.746 kb on - strand, within Psyr_4509 at 5373.793 kb on - strand, within Psyr_4509 at 5373.797 kb on + strand, within Psyr_4509 at 5373.797 kb on + strand, within Psyr_4509 at 5373.798 kb on - strand, within Psyr_4509 at 5373.839 kb on + strand, within Psyr_4509 at 5373.864 kb on - strand, within Psyr_4509 at 5373.887 kb on + strand, within Psyr_4509 at 5373.888 kb on - strand, within Psyr_4509 at 5374.008 kb on - strand, within Psyr_4509 at 5374.016 kb on + strand, within Psyr_4509 at 5374.017 kb on - strand, within Psyr_4509 at 5374.017 kb on - strand, within Psyr_4509 at 5374.034 kb on + strand, within Psyr_4509 at 5374.089 kb on + strand at 5374.089 kb on + strand at 5374.090 kb on - strand at 5374.161 kb on + strand at 5374.161 kb on + strand at 5374.161 kb on + strand at 5374.162 kb on - strand at 5374.182 kb on - strand at 5374.182 kb on - strand at 5374.182 kb on - strand at 5374.182 kb on - strand at 5374.269 kb on + strand, within Psyr_4510 at 5374.270 kb on - strand, within Psyr_4510 at 5374.270 kb on - strand, within Psyr_4510 at 5374.281 kb on - strand, within Psyr_4510 at 5374.281 kb on - strand, within Psyr_4510 at 5374.314 kb on - strand, within Psyr_4510 at 5374.316 kb on + strand, within Psyr_4510 at 5374.496 kb on + strand, within Psyr_4510 at 5374.496 kb on + strand, within Psyr_4510 at 5374.496 kb on + strand, within Psyr_4510 at 5374.525 kb on + strand, within Psyr_4510 at 5374.525 kb on + strand, within Psyr_4510 at 5374.526 kb on - strand, within Psyr_4510 at 5374.527 kb on + strand, within Psyr_4510 at 5374.560 kb on - strand, within Psyr_4510 at 5374.565 kb on + strand, within Psyr_4510 at 5374.566 kb on - strand, within Psyr_4510 at 5374.641 kb on + strand, within Psyr_4510 at 5374.646 kb on + strand, within Psyr_4510 at 5374.683 kb on - strand, within Psyr_4510 at 5374.695 kb on + strand, within Psyr_4510 at 5374.696 kb on - strand, within Psyr_4510 at 5374.759 kb on + strand, within Psyr_4510 at 5374.760 kb on - strand, within Psyr_4510 at 5374.760 kb on - strand, within Psyr_4510 at 5374.760 kb on - strand, within Psyr_4510 at 5374.760 kb on - strand, within Psyr_4510 at 5374.760 kb on - strand, within Psyr_4510 at 5374.785 kb on - strand, within Psyr_4510 at 5374.854 kb on + strand, within Psyr_4510 at 5374.855 kb on - strand, within Psyr_4510 at 5374.855 kb on - strand, within Psyr_4510 at 5374.883 kb on + strand, within Psyr_4510 at 5374.990 kb on + strand at 5374.991 kb on - strand at 5375.055 kb on + strand at 5375.055 kb on + strand at 5375.056 kb on - strand at 5375.056 kb on - strand at 5375.066 kb on + strand at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.077 kb on + strand, within Psyr_4511 at 5375.078 kb on - strand, within Psyr_4511 at 5375.078 kb on - strand, within Psyr_4511
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,372,560 + Psyr_4508 0.64 +0.0 5,372,628 - Psyr_4508 0.70 -2.6 5,372,739 + Psyr_4508 0.80 +2.0 5,372,739 + Psyr_4508 0.80 -1.4 5,372,739 + Psyr_4508 0.80 -0.4 5,372,739 + Psyr_4508 0.80 +1.0 5,372,739 + Psyr_4508 0.80 +0.7 5,372,739 + Psyr_4508 0.80 +0.8 5,372,740 - Psyr_4508 0.80 +1.4 5,372,740 - Psyr_4508 0.80 +0.3 5,372,740 - Psyr_4508 0.80 -0.7 5,372,740 - Psyr_4508 0.80 +0.2 5,372,740 - Psyr_4508 0.80 -0.2 5,372,740 - Psyr_4508 0.80 -0.6 5,372,740 - Psyr_4508 0.80 +0.2 5,372,740 - Psyr_4508 0.80 +0.1 5,372,741 + Psyr_4508 0.80 -0.7 5,372,741 + Psyr_4508 0.80 -0.7 5,372,748 + Psyr_4508 0.81 +1.2 5,372,784 - Psyr_4508 0.84 -2.0 5,372,784 - Psyr_4508 0.84 +0.2 5,372,790 - Psyr_4508 0.85 +1.3 5,372,792 + Psyr_4508 0.85 -2.0 5,372,792 + Psyr_4508 0.85 +0.8 5,372,792 + Psyr_4508 0.85 +2.1 5,372,792 + Psyr_4508 0.85 +0.3 5,372,793 - Psyr_4508 0.85 -2.4 5,372,958 + +0.4 5,372,959 - +0.6 5,372,987 + -3.2 5,372,987 + -2.7 5,372,987 + +0.8 5,372,988 - -0.9 5,372,988 - +1.3 5,373,083 + +1.2 5,373,083 + +1.3 5,373,083 + -1.9 5,373,083 + +0.2 5,373,083 + +0.4 5,373,083 + +0.9 5,373,083 + -0.9 5,373,084 - +0.3 5,373,084 - +0.9 5,373,084 - -2.2 5,373,084 - +2.0 5,373,084 - +1.4 5,373,084 - +0.3 5,373,084 - -0.3 5,373,084 - -0.6 5,373,084 - -1.6 5,373,085 + -2.2 5,373,086 - -2.4 5,373,086 - +0.3 5,373,086 - -1.2 5,373,118 - +1.0 5,373,118 - -1.1 5,373,132 + +1.9 5,373,134 + -2.6 5,373,134 + -2.1 5,373,135 - +0.1 5,373,204 + -2.2 5,373,230 + -0.6 5,373,248 + +1.9 5,373,316 - -0.3 5,373,327 + +2.2 5,373,361 + +0.4 5,373,362 - +1.3 5,373,368 + +1.2 5,373,369 - -0.6 5,373,455 - -0.2 5,373,455 - -1.6 5,373,455 - -1.7 5,373,455 - -0.2 5,373,455 - -2.9 5,373,479 + +0.4 5,373,479 + -2.7 5,373,479 + +1.1 5,373,479 + -1.6 5,373,479 + -0.7 5,373,479 + +0.8 5,373,479 + -2.5 5,373,480 - -0.9 5,373,480 - -1.2 5,373,480 - -3.1 5,373,480 - -2.0 5,373,480 - +1.6 5,373,480 - +0.7 5,373,480 - -1.1 5,373,480 - +1.2 5,373,480 - -0.6 5,373,480 - +0.8 5,373,480 - -0.4 5,373,480 - -2.5 5,373,480 - +0.6 5,373,480 - +0.6 5,373,493 + +0.8 5,373,494 - -2.7 5,373,494 - -1.6 5,373,494 - -0.0 5,373,512 - +0.5 5,373,549 + Psyr_4509 0.12 -2.9 5,373,550 - Psyr_4509 0.12 -0.8 5,373,560 + Psyr_4509 0.14 +1.1 5,373,560 + Psyr_4509 0.14 +0.6 5,373,560 + Psyr_4509 0.14 -3.0 5,373,560 + Psyr_4509 0.14 +4.2 5,373,560 + Psyr_4509 0.14 +1.1 5,373,560 + Psyr_4509 0.14 -1.0 5,373,560 + Psyr_4509 0.14 +0.1 5,373,560 + Psyr_4509 0.14 +2.3 5,373,560 + Psyr_4509 0.14 -0.9 5,373,561 - Psyr_4509 0.14 +0.1 5,373,561 - Psyr_4509 0.14 +0.5 5,373,561 - Psyr_4509 0.14 +1.2 5,373,561 - Psyr_4509 0.14 -1.4 5,373,608 - Psyr_4509 0.21 -0.3 5,373,622 - Psyr_4509 0.23 +0.5 5,373,657 + Psyr_4509 0.28 +0.2 5,373,657 + Psyr_4509 0.28 +0.8 5,373,657 + Psyr_4509 0.28 +1.8 5,373,657 + Psyr_4509 0.28 +0.5 5,373,657 + Psyr_4509 0.28 -1.6 5,373,658 - Psyr_4509 0.29 +2.0 5,373,658 - Psyr_4509 0.29 +0.1 5,373,680 + Psyr_4509 0.32 +0.9 5,373,680 + Psyr_4509 0.32 +1.6 5,373,680 + Psyr_4509 0.32 +0.2 5,373,681 - Psyr_4509 0.32 +0.2 5,373,681 - Psyr_4509 0.32 -0.8 5,373,744 - Psyr_4509 0.42 +1.1 5,373,744 - Psyr_4509 0.42 +0.6 5,373,744 - Psyr_4509 0.42 -0.5 5,373,745 + Psyr_4509 0.42 -0.2 5,373,745 + Psyr_4509 0.42 -2.7 5,373,745 + Psyr_4509 0.42 -2.1 5,373,745 + Psyr_4509 0.42 -1.4 5,373,746 - Psyr_4509 0.42 +1.3 5,373,746 - Psyr_4509 0.42 +1.1 5,373,793 - Psyr_4509 0.49 +2.5 5,373,797 + Psyr_4509 0.50 -1.2 5,373,797 + Psyr_4509 0.50 +1.6 5,373,798 - Psyr_4509 0.50 +2.5 5,373,839 + Psyr_4509 0.56 +1.0 5,373,864 - Psyr_4509 0.60 +0.5 5,373,887 + Psyr_4509 0.63 +0.8 5,373,888 - Psyr_4509 0.64 -0.5 5,374,008 - Psyr_4509 0.82 -0.3 5,374,016 + Psyr_4509 0.83 -1.6 5,374,017 - Psyr_4509 0.83 +0.7 5,374,017 - Psyr_4509 0.83 +1.2 5,374,034 + Psyr_4509 0.86 +0.1 5,374,089 + -0.9 5,374,089 + +1.6 5,374,090 - -3.2 5,374,161 + -1.0 5,374,161 + +2.6 5,374,161 + +0.2 5,374,162 - +1.1 5,374,182 - +1.1 5,374,182 - -1.6 5,374,182 - +1.3 5,374,182 - -3.1 5,374,269 + Psyr_4510 0.17 -0.1 5,374,270 - Psyr_4510 0.17 -2.1 5,374,270 - Psyr_4510 0.17 +0.5 5,374,281 - Psyr_4510 0.19 +0.6 5,374,281 - Psyr_4510 0.19 +1.9 5,374,314 - Psyr_4510 0.22 +1.7 5,374,316 + Psyr_4510 0.23 +0.6 5,374,496 + Psyr_4510 0.43 -0.0 5,374,496 + Psyr_4510 0.43 +1.0 5,374,496 + Psyr_4510 0.43 +0.3 5,374,525 + Psyr_4510 0.47 -0.7 5,374,525 + Psyr_4510 0.47 -0.4 5,374,526 - Psyr_4510 0.47 +1.0 5,374,527 + Psyr_4510 0.47 -1.4 5,374,560 - Psyr_4510 0.51 +0.5 5,374,565 + Psyr_4510 0.51 -1.6 5,374,566 - Psyr_4510 0.51 +4.2 5,374,641 + Psyr_4510 0.60 -1.2 5,374,646 + Psyr_4510 0.61 +1.0 5,374,683 - Psyr_4510 0.65 -3.4 5,374,695 + Psyr_4510 0.66 +0.9 5,374,696 - Psyr_4510 0.66 +0.6 5,374,759 + Psyr_4510 0.74 +2.9 5,374,760 - Psyr_4510 0.74 -3.1 5,374,760 - Psyr_4510 0.74 -2.5 5,374,760 - Psyr_4510 0.74 +0.3 5,374,760 - Psyr_4510 0.74 +1.0 5,374,760 - Psyr_4510 0.74 +3.0 5,374,785 - Psyr_4510 0.77 +0.1 5,374,854 + Psyr_4510 0.84 -1.4 5,374,855 - Psyr_4510 0.85 +3.3 5,374,855 - Psyr_4510 0.85 +1.1 5,374,883 + Psyr_4510 0.88 +0.2 5,374,990 + -0.7 5,374,991 - -0.2 5,375,055 + -2.1 5,375,055 + +2.4 5,375,056 - -2.7 5,375,056 - +0.1 5,375,066 + -3.3 5,375,077 + Psyr_4511 0.11 +0.9 5,375,077 + Psyr_4511 0.11 -1.3 5,375,077 + Psyr_4511 0.11 -0.2 5,375,077 + Psyr_4511 0.11 +1.3 5,375,077 + Psyr_4511 0.11 -0.4 5,375,077 + Psyr_4511 0.11 +1.0 5,375,077 + Psyr_4511 0.11 -0.4 5,375,077 + Psyr_4511 0.11 +0.8 5,375,078 - Psyr_4511 0.11 -3.2 5,375,078 - Psyr_4511 0.11 +1.2
Or see this region's nucleotide sequence