Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4413 and Psyr_4414 are separated by 348 nucleotides Psyr_4414 and Psyr_4415 overlap by 1 nucleotides Psyr_4415 and Psyr_4416 overlap by 4 nucleotides
Psyr_4413: Psyr_4413 - conserved hypothetical protein, at 5,276,400 to 5,277,215
_4413
Psyr_4414: Psyr_4414 - precorrin-3 methyltransferase, at 5,277,564 to 5,279,267
_4414
Psyr_4415: Psyr_4415 - cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase, at 5,279,267 to 5,280,001
_4415
Psyr_4416: Psyr_4416 - precorrin-8X methylmutase, at 5,279,998 to 5,280,624
_4416
Position (kb) 5277
5278
5279
5280 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5276.784 kb on - strand, within Psyr_4413 at 5276.784 kb on - strand, within Psyr_4413 at 5276.857 kb on + strand, within Psyr_4413 at 5276.857 kb on + strand, within Psyr_4413 at 5276.858 kb on - strand, within Psyr_4413 at 5276.858 kb on - strand, within Psyr_4413 at 5276.914 kb on + strand, within Psyr_4413 at 5276.914 kb on + strand, within Psyr_4413 at 5276.915 kb on - strand, within Psyr_4413 at 5277.014 kb on + strand, within Psyr_4413 at 5277.100 kb on - strand, within Psyr_4413 at 5277.125 kb on - strand, within Psyr_4413 at 5277.173 kb on - strand at 5277.173 kb on - strand at 5277.173 kb on - strand at 5277.173 kb on - strand at 5277.221 kb on + strand at 5277.229 kb on + strand at 5277.230 kb on - strand at 5277.230 kb on - strand at 5277.270 kb on + strand at 5277.384 kb on - strand at 5277.546 kb on + strand at 5277.547 kb on - strand at 5277.573 kb on - strand at 5277.586 kb on + strand at 5277.599 kb on + strand at 5277.601 kb on + strand at 5277.602 kb on - strand at 5277.602 kb on - strand at 5277.602 kb on - strand at 5277.841 kb on + strand, within Psyr_4414 at 5277.841 kb on + strand, within Psyr_4414 at 5277.842 kb on - strand, within Psyr_4414 at 5277.842 kb on - strand, within Psyr_4414 at 5278.225 kb on + strand, within Psyr_4414 at 5278.225 kb on + strand, within Psyr_4414 at 5278.225 kb on + strand, within Psyr_4414 at 5278.226 kb on - strand, within Psyr_4414 at 5278.226 kb on - strand, within Psyr_4414 at 5278.226 kb on - strand, within Psyr_4414 at 5278.643 kb on + strand, within Psyr_4414 at 5278.643 kb on + strand, within Psyr_4414 at 5278.643 kb on + strand, within Psyr_4414 at 5278.643 kb on + strand, within Psyr_4414 at 5278.644 kb on - strand, within Psyr_4414 at 5278.644 kb on - strand, within Psyr_4414 at 5278.652 kb on - strand, within Psyr_4414 at 5278.652 kb on - strand, within Psyr_4414 at 5278.652 kb on - strand, within Psyr_4414 at 5279.101 kb on + strand at 5279.102 kb on - strand at 5279.102 kb on - strand at 5279.134 kb on + strand at 5279.134 kb on + strand at 5279.135 kb on - strand at 5279.135 kb on - strand at 5279.135 kb on - strand at 5279.135 kb on - strand at 5279.297 kb on - strand at 5279.382 kb on + strand, within Psyr_4415 at 5279.382 kb on + strand, within Psyr_4415 at 5279.382 kb on + strand, within Psyr_4415 at 5279.382 kb on + strand, within Psyr_4415 at 5279.382 kb on + strand, within Psyr_4415 at 5279.383 kb on - strand, within Psyr_4415 at 5279.383 kb on - strand, within Psyr_4415 at 5279.616 kb on + strand, within Psyr_4415 at 5279.617 kb on - strand, within Psyr_4415 at 5279.617 kb on - strand, within Psyr_4415 at 5279.617 kb on - strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.643 kb on + strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.644 kb on - strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.649 kb on + strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.650 kb on - strand, within Psyr_4415 at 5279.659 kb on - strand, within Psyr_4415 at 5279.743 kb on - strand, within Psyr_4415 at 5279.743 kb on - strand, within Psyr_4415 at 5279.743 kb on - strand, within Psyr_4415 at 5279.875 kb on + strand, within Psyr_4415 at 5279.892 kb on + strand, within Psyr_4415 at 5279.892 kb on + strand, within Psyr_4415 at 5279.892 kb on + strand, within Psyr_4415 at 5279.893 kb on - strand, within Psyr_4415 at 5279.893 kb on - strand, within Psyr_4415 at 5279.893 kb on - strand, within Psyr_4415 at 5280.200 kb on + strand, within Psyr_4416 at 5280.200 kb on + strand, within Psyr_4416 at 5280.201 kb on - strand, within Psyr_4416 at 5280.201 kb on - strand, within Psyr_4416 at 5280.235 kb on + strand, within Psyr_4416 at 5280.235 kb on + strand, within Psyr_4416 at 5280.236 kb on - strand, within Psyr_4416 at 5280.236 kb on - strand, within Psyr_4416
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,276,784 - Psyr_4413 0.47 +0.6 5,276,784 - Psyr_4413 0.47 +0.7 5,276,857 + Psyr_4413 0.56 +0.9 5,276,857 + Psyr_4413 0.56 -0.2 5,276,858 - Psyr_4413 0.56 -1.0 5,276,858 - Psyr_4413 0.56 +1.7 5,276,914 + Psyr_4413 0.63 +1.7 5,276,914 + Psyr_4413 0.63 -2.3 5,276,915 - Psyr_4413 0.63 -0.4 5,277,014 + Psyr_4413 0.75 -0.6 5,277,100 - Psyr_4413 0.86 +0.3 5,277,125 - Psyr_4413 0.89 -0.1 5,277,173 - +0.5 5,277,173 - -0.2 5,277,173 - -0.8 5,277,173 - -0.2 5,277,221 + -2.3 5,277,229 + +0.4 5,277,230 - -1.6 5,277,230 - +5.4 5,277,270 + +0.2 5,277,384 - -0.8 5,277,546 + -1.8 5,277,547 - -0.3 5,277,573 - +1.9 5,277,586 + -0.0 5,277,599 + -0.0 5,277,601 + -1.0 5,277,602 - +0.6 5,277,602 - -1.4 5,277,602 - -2.0 5,277,841 + Psyr_4414 0.16 -1.6 5,277,841 + Psyr_4414 0.16 +2.0 5,277,842 - Psyr_4414 0.16 -0.7 5,277,842 - Psyr_4414 0.16 +1.1 5,278,225 + Psyr_4414 0.39 -0.7 5,278,225 + Psyr_4414 0.39 -1.7 5,278,225 + Psyr_4414 0.39 -1.6 5,278,226 - Psyr_4414 0.39 +0.8 5,278,226 - Psyr_4414 0.39 +0.5 5,278,226 - Psyr_4414 0.39 -0.5 5,278,643 + Psyr_4414 0.63 -0.4 5,278,643 + Psyr_4414 0.63 -2.2 5,278,643 + Psyr_4414 0.63 +1.6 5,278,643 + Psyr_4414 0.63 +0.1 5,278,644 - Psyr_4414 0.63 -3.2 5,278,644 - Psyr_4414 0.63 -0.0 5,278,652 - Psyr_4414 0.64 -0.5 5,278,652 - Psyr_4414 0.64 -3.3 5,278,652 - Psyr_4414 0.64 -1.4 5,279,101 + -1.0 5,279,102 - -1.0 5,279,102 - -3.6 5,279,134 + -0.8 5,279,134 + -2.2 5,279,135 - +1.1 5,279,135 - -1.6 5,279,135 - +0.3 5,279,135 - -0.7 5,279,297 - -3.7 5,279,382 + Psyr_4415 0.16 -2.8 5,279,382 + Psyr_4415 0.16 -2.1 5,279,382 + Psyr_4415 0.16 -2.9 5,279,382 + Psyr_4415 0.16 -1.4 5,279,382 + Psyr_4415 0.16 +0.6 5,279,383 - Psyr_4415 0.16 +1.1 5,279,383 - Psyr_4415 0.16 -0.7 5,279,616 + Psyr_4415 0.47 +2.3 5,279,617 - Psyr_4415 0.48 +0.5 5,279,617 - Psyr_4415 0.48 +2.0 5,279,617 - Psyr_4415 0.48 +0.6 5,279,643 + Psyr_4415 0.51 -1.2 5,279,643 + Psyr_4415 0.51 +1.6 5,279,643 + Psyr_4415 0.51 -2.4 5,279,643 + Psyr_4415 0.51 +2.8 5,279,643 + Psyr_4415 0.51 -1.6 5,279,643 + Psyr_4415 0.51 -1.0 5,279,643 + Psyr_4415 0.51 +0.4 5,279,643 + Psyr_4415 0.51 -2.3 5,279,644 - Psyr_4415 0.51 -0.6 5,279,644 - Psyr_4415 0.51 -1.7 5,279,644 - Psyr_4415 0.51 +2.0 5,279,644 - Psyr_4415 0.51 +0.9 5,279,649 + Psyr_4415 0.52 -1.1 5,279,649 + Psyr_4415 0.52 +1.2 5,279,649 + Psyr_4415 0.52 -2.1 5,279,649 + Psyr_4415 0.52 +0.2 5,279,649 + Psyr_4415 0.52 -1.5 5,279,649 + Psyr_4415 0.52 +0.5 5,279,649 + Psyr_4415 0.52 +1.0 5,279,650 - Psyr_4415 0.52 +0.1 5,279,650 - Psyr_4415 0.52 -1.6 5,279,650 - Psyr_4415 0.52 -2.3 5,279,650 - Psyr_4415 0.52 -2.1 5,279,650 - Psyr_4415 0.52 +3.3 5,279,650 - Psyr_4415 0.52 -1.6 5,279,650 - Psyr_4415 0.52 -0.3 5,279,650 - Psyr_4415 0.52 -2.7 5,279,650 - Psyr_4415 0.52 +2.3 5,279,650 - Psyr_4415 0.52 -2.5 5,279,650 - Psyr_4415 0.52 -0.7 5,279,659 - Psyr_4415 0.53 -0.2 5,279,743 - Psyr_4415 0.65 -2.4 5,279,743 - Psyr_4415 0.65 -3.1 5,279,743 - Psyr_4415 0.65 -1.7 5,279,875 + Psyr_4415 0.83 -0.9 5,279,892 + Psyr_4415 0.85 -0.0 5,279,892 + Psyr_4415 0.85 -1.6 5,279,892 + Psyr_4415 0.85 -1.9 5,279,893 - Psyr_4415 0.85 -1.2 5,279,893 - Psyr_4415 0.85 +0.8 5,279,893 - Psyr_4415 0.85 -4.0 5,280,200 + Psyr_4416 0.32 -0.4 5,280,200 + Psyr_4416 0.32 -1.0 5,280,201 - Psyr_4416 0.32 -1.4 5,280,201 - Psyr_4416 0.32 -2.2 5,280,235 + Psyr_4416 0.38 +0.2 5,280,235 + Psyr_4416 0.38 -2.8 5,280,236 - Psyr_4416 0.38 -1.4 5,280,236 - Psyr_4416 0.38 -1.1
Or see this region's nucleotide sequence