Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3502

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
4,172,740	-		Psyr_3501	0.57	-0.8
4,172,755	+		Psyr_3501	0.58	-2.8
4,172,755	+		Psyr_3501	0.58	+0.1
4,172,759	+		Psyr_3501	0.59	+2.8
4,172,759	+		Psyr_3501	0.59	-2.0
4,172,759	+		Psyr_3501	0.59	+0.3
4,172,759	+		Psyr_3501	0.59	-0.6
4,172,759	+		Psyr_3501	0.59	+0.5
4,172,760	-		Psyr_3501	0.59	+1.9
4,172,760	-		Psyr_3501	0.59	-0.6
4,172,760	-		Psyr_3501	0.59	+1.9
4,172,760	-		Psyr_3501	0.59	-1.4
4,172,760	-		Psyr_3501	0.59	-3.1
4,172,760	-		Psyr_3501	0.59	-0.3
4,173,031	+		Psyr_3501	0.79	+1.4
4,173,168	-		Psyr_3501	0.89	-2.0
4,173,218	+				-0.3
4,173,219	-				-0.9
4,173,389	+				-1.4
4,173,412	+				+0.2
4,173,433	+				+0.4
4,173,434	-				-0.6
4,173,434	-				-0.1
4,173,434	-				-1.6
4,173,468	+				+0.9
4,173,469	-				-1.0
4,173,837	+				-0.4
4,173,837	+				+0.1
4,173,837	+				-1.0
4,173,837	+				+1.5
4,173,837	+				+1.3
4,173,837	+				+0.4
4,173,855	+				-2.8
4,173,871	-				-0.5
4,173,871	-				-0.7
4,173,871	-				+0.2
4,173,871	-				-0.2
4,173,871	-				+0.0
4,173,871	-				+0.7
4,173,871	-				+0.4
4,173,871	-				-1.2
4,173,871	-				+0.4
4,173,871	-				+0.0
4,173,871	-				-1.1
4,173,871	-				-1.0
4,173,871	-				-0.0
4,173,871	-				+0.2
4,173,871	-				+3.0
4,173,876	+				-0.0
4,173,906	+				-2.3
4,173,906	+				-0.5
4,173,906	+				+1.8
4,173,906	+				-0.1
4,173,906	+				-1.9
4,173,906	+				+0.0
4,173,907	-				+0.3
4,174,141	-		Psyr_3502	0.15	-0.4
4,174,184	+		Psyr_3502	0.17	+1.2
4,174,184	+		Psyr_3502	0.17	-1.0
4,174,218	+		Psyr_3502	0.18	+0.7
4,174,218	+		Psyr_3502	0.18	-2.9
4,174,218	+		Psyr_3502	0.18	+0.3
4,174,218	+		Psyr_3502	0.18	+2.9
4,174,219	-		Psyr_3502	0.18	+1.1
4,174,219	-		Psyr_3502	0.18	+0.7
4,174,219	-		Psyr_3502	0.18	+2.5
4,174,219	-		Psyr_3502	0.18	-0.9
4,174,219	-		Psyr_3502	0.18	+0.9
4,174,219	-		Psyr_3502	0.18	+1.5
4,174,219	-		Psyr_3502	0.18	-1.1
4,174,219	-		Psyr_3502	0.18	+2.3
4,174,498	+		Psyr_3502	0.26	+2.0
4,174,498	+		Psyr_3502	0.26	+0.9
4,174,498	+		Psyr_3502	0.26	+0.3
4,174,498	+		Psyr_3502	0.26	+1.1
4,174,498	+		Psyr_3502	0.26	+2.6
4,174,499	-		Psyr_3502	0.26	-0.5
4,174,499	-		Psyr_3502	0.26	+0.6
4,174,499	-		Psyr_3502	0.26	-0.1
4,174,569	+		Psyr_3502	0.28	-1.3
4,174,570	-		Psyr_3502	0.28	-1.3
4,174,591	-		Psyr_3502	0.29	-1.0
4,174,668	-		Psyr_3502	0.31	-2.5
4,175,408	+		Psyr_3502	0.53	+1.3
4,175,468	-		Psyr_3502	0.55	+1.5
4,175,520	+		Psyr_3502	0.56	-0.9
4,175,626	-		Psyr_3502	0.59	-0.5
4,175,789	+		Psyr_3502	0.64	-0.2
4,175,789	+		Psyr_3502	0.64	-1.3
4,175,793	+		Psyr_3502	0.64	+2.4
4,175,794	-		Psyr_3502	0.64	-0.3
4,175,804	+		Psyr_3502	0.64	+2.1
4,175,804	+		Psyr_3502	0.64	+0.7
4,175,851	-		Psyr_3502	0.66	+1.7
4,175,851	-		Psyr_3502	0.66	+0.7
4,175,864	+		Psyr_3502	0.66	-0.9
4,175,864	+		Psyr_3502	0.66	-0.2
4,175,864	+		Psyr_3502	0.66	-2.5
4,175,864	+		Psyr_3502	0.66	-0.3
4,175,864	+		Psyr_3502	0.66	+1.4
4,175,864	+		Psyr_3502	0.66	+1.0
4,175,865	-		Psyr_3502	0.66	-3.3
4,175,865	-		Psyr_3502	0.66	+0.5
4,175,865	-		Psyr_3502	0.66	-1.6
4,175,865	-		Psyr_3502	0.66	-0.8
4,175,870	+		Psyr_3502	0.66	-0.7
4,175,871	-		Psyr_3502	0.66	+2.0
4,175,875	+		Psyr_3502	0.66	+4.0
4,175,953	+		Psyr_3502	0.69	-0.2
4,175,953	+		Psyr_3502	0.69	-0.7
4,175,953	+		Psyr_3502	0.69	-1.8
4,175,954	-		Psyr_3502	0.69	-1.9
4,175,954	-		Psyr_3502	0.69	+1.3
4,176,029	+		Psyr_3502	0.71	+1.0
4,176,029	+		Psyr_3502	0.71	+0.1
4,176,074	+		Psyr_3502	0.72	-0.3
4,176,074	+		Psyr_3502	0.72	-0.1
4,176,139	+		Psyr_3502	0.74	+0.4
4,176,140	-		Psyr_3502	0.74	+1.8
4,176,254	+		Psyr_3502	0.78	-0.1
4,176,272	-		Psyr_3502	0.78	-0.5
4,176,297	-		Psyr_3502	0.79	+1.5
4,176,376	-		Psyr_3502	0.81	-0.1
4,176,474	+		Psyr_3502	0.84	-0.4
4,176,490	+		Psyr_3502	0.85	+0.2
4,176,490	+		Psyr_3502	0.85	-0.7
4,176,491	-		Psyr_3502	0.85	-0.6
4,176,491	-		Psyr_3502	0.85	+0.0
4,176,491	-		Psyr_3502	0.85	+0.3
4,176,491	-		Psyr_3502	0.85	+2.3
4,176,507	+		Psyr_3502	0.85	+1.3
4,176,508	-		Psyr_3502	0.85	-0.7
4,176,508	-		Psyr_3502	0.85	-0.6
4,176,538	+		Psyr_3502	0.86	+0.2
4,176,563	-		Psyr_3502	0.87	+0.3
4,176,619	+		Psyr_3502	0.88	-2.4
4,176,619	+		Psyr_3502	0.88	+0.8
4,176,619	+		Psyr_3502	0.88	-1.0
4,176,626	-		Psyr_3502	0.89	-0.7
4,176,703	+				+3.3
4,176,704	-				+1.5
4,176,744	+				+1.7
4,176,744	+				+0.6
4,176,744	+				-2.2
4,176,816	+				-0.0
4,176,816	+				+0.4
4,176,816	+				+0.6
4,176,816	+				-0.5
4,176,816	+				+1.1
4,176,816	+				-3.7
4,176,816	+				-0.9
4,176,816	+				-0.6
4,176,817	-				+0.7
4,176,817	-				+0.8
4,176,817	-				+1.3
4,176,817	-				+3.1
4,176,817	-				-0.7
4,176,817	-				-0.1
4,176,817	-				-4.2
4,176,817	-				-3.0
4,176,817	-				-1.5
4,176,817	-				+0.4
4,176,817	-				-0.1
4,176,819	-				-1.9
4,176,883	+				+1.4
4,177,010	-				-2.0
4,177,120	-				-1.4
4,177,134	-				-0.6
4,177,134	-				+0.8
4,177,137	+				-0.3
4,177,155	-				+0.5
4,177,212	+				-0.3
4,177,212	+				+0.1
4,177,216	-				+0.5
4,177,274	+		Psyr_3503	0.19	-1.9
4,177,274	+		Psyr_3503	0.19	+0.6
4,177,274	+		Psyr_3503	0.19	-0.9
4,177,275	-		Psyr_3503	0.19	+0.2
4,177,275	-		Psyr_3503	0.19	-1.5
4,177,275	-		Psyr_3503	0.19	-0.3
4,177,275	-		Psyr_3503	0.19	+1.3
4,177,280	+		Psyr_3503	0.20	+0.9
4,177,280	+		Psyr_3503	0.20	-1.3
4,177,280	+		Psyr_3503	0.20	-1.0
4,177,313	+		Psyr_3503	0.26	+0.1
4,177,314	-		Psyr_3503	0.26	-0.7
4,177,380	+		Psyr_3503	0.39	+1.7
4,177,380	+		Psyr_3503	0.39	-0.3
4,177,558	+		Psyr_3503	0.73	-1.0
4,177,625	+		Psyr_3503	0.85	+0.6
4,177,625	+		Psyr_3503	0.85	-1.4
4,177,626	-		Psyr_3503	0.85	+2.8
4,177,626	-		Psyr_3503	0.85	-0.3
4,177,667	+				+0.1
4,177,667	+				-3.8
4,177,667	+				-0.0
4,177,667	+				+2.6
4,177,667	+				-0.3
4,177,667	+				+0.4
4,177,667	+				+0.5
4,177,668	-				-0.3
4,177,668	-				-2.3
4,177,668	-				-2.9
4,177,668	-				+0.5
4,177,853	+				+1.0
4,177,853	+				-0.0
4,177,853	+				+1.9
4,177,853	+				+0.4
4,177,853	+				+1.3
4,177,853	+				+0.7
4,177,853	+				+0.0
4,177,853	+				-1.0
4,177,853	+				+0.1
4,177,854	-				-0.2
4,177,854	-				+1.5
4,177,854	-				+3.2
4,177,854	-				-0.3
4,177,854	-				-0.1
4,177,854	-				-0.2