Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3243

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
3,881,246	-		Psyr_3242	0.18	-2.8
3,881,276	-		Psyr_3242	0.20	+0.2
3,881,276	-		Psyr_3242	0.20	+0.2
3,881,319	-		Psyr_3242	0.24	+0.6
3,881,479	+		Psyr_3242	0.38	-0.7
3,881,479	+		Psyr_3242	0.38	+1.4
3,881,479	+		Psyr_3242	0.38	+1.4
3,881,479	+		Psyr_3242	0.38	-1.6
3,881,479	+		Psyr_3242	0.38	+0.0
3,881,480	-		Psyr_3242	0.38	+0.2
3,881,480	-		Psyr_3242	0.38	-0.8
3,881,480	-		Psyr_3242	0.38	+2.0
3,881,554	+		Psyr_3242	0.45	+0.4
3,881,554	+		Psyr_3242	0.45	-0.4
3,881,554	+		Psyr_3242	0.45	+2.3
3,881,555	-		Psyr_3242	0.45	-2.7
3,881,555	-		Psyr_3242	0.45	+2.8
3,881,555	-		Psyr_3242	0.45	-0.4
3,881,849	-		Psyr_3242	0.70	-0.4
3,881,849	-		Psyr_3242	0.70	+2.8
3,881,849	-		Psyr_3242	0.70	-1.2
3,881,849	-		Psyr_3242	0.70	+0.8
3,881,971	+		Psyr_3242	0.81	+0.0
3,881,971	+		Psyr_3242	0.81	+1.9
3,881,971	+		Psyr_3242	0.81	+0.4
3,881,971	+		Psyr_3242	0.81	-1.6
3,881,971	+		Psyr_3242	0.81	+0.1
3,881,971	+		Psyr_3242	0.81	+0.9
3,881,971	+		Psyr_3242	0.81	-2.5
3,881,971	+		Psyr_3242	0.81	+0.5
3,881,971	+		Psyr_3242	0.81	-1.3
3,881,971	+		Psyr_3242	0.81	+0.7
3,881,971	+		Psyr_3242	0.81	+0.9
3,881,971	+		Psyr_3242	0.81	-1.3
3,881,971	+		Psyr_3242	0.81	-1.8
3,881,971	+		Psyr_3242	0.81	-3.3
3,881,971	+		Psyr_3242	0.81	+0.3
3,881,971	+		Psyr_3242	0.81	-1.4
3,881,972	-		Psyr_3242	0.81	-0.4
3,881,972	-		Psyr_3242	0.81	+0.7
3,881,972	-		Psyr_3242	0.81	+1.7
3,881,972	-		Psyr_3242	0.81	+0.9
3,881,972	-		Psyr_3242	0.81	+1.1
3,881,972	-		Psyr_3242	0.81	+0.3
3,881,972	-		Psyr_3242	0.81	+1.6
3,881,972	-		Psyr_3242	0.81	-2.3
3,881,972	-		Psyr_3242	0.81	+1.7
3,881,972	-		Psyr_3242	0.81	-3.0
3,881,972	-		Psyr_3242	0.81	+0.5
3,881,972	-		Psyr_3242	0.81	+0.0
3,881,972	-		Psyr_3242	0.81	-2.0
3,881,972	-		Psyr_3242	0.81	-0.5
3,881,972	-		Psyr_3242	0.81	+0.6
3,881,972	-		Psyr_3242	0.81	+3.1
3,881,972	-		Psyr_3242	0.81	+2.2
3,881,972	-		Psyr_3242	0.81	-0.8
3,881,972	-		Psyr_3242	0.81	+0.1
3,881,972	-		Psyr_3242	0.81	-2.1
3,881,972	-		Psyr_3242	0.81	+0.3
3,881,972	-		Psyr_3242	0.81	+0.3
3,882,038	-		Psyr_3242	0.87	-3.0
3,882,039	+		Psyr_3242	0.87	-0.4
3,882,181	+				-0.3
3,882,373	+				-0.6
3,882,374	-				-2.0
3,882,436	+				-0.8
3,882,436	+				-1.6
3,882,436	+				-0.2
3,882,436	+				+1.2
3,882,437	-				+0.7
3,882,437	-				+2.3
3,882,437	-				+1.4
3,882,612	+		Psyr_3243	0.18	+0.4
3,882,688	+		Psyr_3243	0.21	+0.8
3,882,688	+		Psyr_3243	0.21	+1.5
3,882,689	-		Psyr_3243	0.21	+1.2
3,882,719	-		Psyr_3243	0.23	-3.0
3,882,898	+		Psyr_3243	0.31	-2.9
3,882,910	+		Psyr_3243	0.31	+1.2
3,882,910	+		Psyr_3243	0.31	-1.4
3,882,910	+		Psyr_3243	0.31	-1.8
3,882,910	+		Psyr_3243	0.31	-0.6
3,882,911	-		Psyr_3243	0.31	-1.1
3,882,911	-		Psyr_3243	0.31	+0.5
3,882,911	-		Psyr_3243	0.31	+1.7
3,882,911	-		Psyr_3243	0.31	+0.6
3,882,911	-		Psyr_3243	0.31	+1.9
3,882,911	-		Psyr_3243	0.31	-0.6
3,882,911	-		Psyr_3243	0.31	+0.7
3,882,937	+		Psyr_3243	0.33	+0.8
3,882,964	+		Psyr_3243	0.34	+1.9
3,882,965	-		Psyr_3243	0.34	-0.9
3,882,997	+		Psyr_3243	0.35	-2.8
3,883,213	+		Psyr_3243	0.45	+0.7
3,883,214	-		Psyr_3243	0.45	-0.1
3,883,394	-		Psyr_3243	0.53	-1.1
3,883,394	-		Psyr_3243	0.53	+1.3
3,883,394	-		Psyr_3243	0.53	-0.0
3,883,395	+		Psyr_3243	0.53	+0.9
3,883,395	+		Psyr_3243	0.53	-1.6
3,883,395	+		Psyr_3243	0.53	-1.4
3,883,395	+		Psyr_3243	0.53	-3.3
3,883,395	+		Psyr_3243	0.53	+2.7
3,883,395	+		Psyr_3243	0.53	-1.1
3,883,395	+		Psyr_3243	0.53	+0.7
3,883,395	+		Psyr_3243	0.53	+1.3
3,883,395	+		Psyr_3243	0.53	-1.1
3,883,396	-		Psyr_3243	0.54	+1.5
3,883,396	-		Psyr_3243	0.54	-1.6
3,883,396	-		Psyr_3243	0.54	+4.2
3,883,396	-		Psyr_3243	0.54	+1.3
3,883,396	-		Psyr_3243	0.54	+1.1
3,883,396	-		Psyr_3243	0.54	+2.2
3,883,435	+		Psyr_3243	0.55	-2.4
3,883,436	-		Psyr_3243	0.55	+1.4
3,883,523	-		Psyr_3243	0.59	-2.4
3,883,523	-		Psyr_3243	0.59	+4.0
3,883,523	-		Psyr_3243	0.59	-2.1
3,883,583	+		Psyr_3243	0.62	+1.2
3,883,583	+		Psyr_3243	0.62	+1.5
3,884,066	-		Psyr_3243	0.84	-2.8
3,884,103	+		Psyr_3243	0.86	-0.7
3,884,103	+		Psyr_3243	0.86	+1.0
3,884,103	+		Psyr_3243	0.86	+2.1
3,884,104	-		Psyr_3243	0.86	-0.0
3,884,104	-		Psyr_3243	0.86	-2.2
3,884,104	-		Psyr_3243	0.86	-0.4
3,884,152	+		Psyr_3243	0.88	-1.1
3,884,152	+		Psyr_3243	0.88	-1.1
3,884,153	-		Psyr_3243	0.88	+2.4
3,884,153	-		Psyr_3243	0.88	+0.6
3,884,415	+				-3.6
3,884,415	+				-1.9
3,884,415	+				-1.1
3,884,416	-				+0.8
3,884,416	-				-1.2
3,884,416	-				-2.9
3,884,667	-				-0.2
3,884,703	+				+1.5
3,884,703	+				+0.6
3,884,704	-				+0.1
3,884,845	+		Psyr_3244	0.10	+1.3
3,884,845	+		Psyr_3244	0.10	+3.5
3,884,845	+		Psyr_3244	0.10	-0.5
3,884,845	+		Psyr_3244	0.10	+0.7
3,884,845	+		Psyr_3244	0.10	-2.1
3,884,845	+		Psyr_3244	0.10	-0.8
3,884,845	+		Psyr_3244	0.10	-2.7
3,884,845	+		Psyr_3244	0.10	-1.6
3,884,845	+		Psyr_3244	0.10	+0.7
3,884,846	-		Psyr_3244	0.11	+0.2
3,884,846	-		Psyr_3244	0.11	-3.0
3,884,861	-		Psyr_3244	0.12	-0.1
3,884,861	-		Psyr_3244	0.12	-2.7
3,884,861	-		Psyr_3244	0.12	-1.9
3,884,905	+		Psyr_3244	0.15	-3.0
3,884,906	-		Psyr_3244	0.15	+1.2
3,885,037	+		Psyr_3244	0.25	+0.2
3,885,038	-		Psyr_3244	0.25	-2.8
3,885,059	-		Psyr_3244	0.26	-0.4
3,885,136	+		Psyr_3244	0.32	-1.6
3,885,136	+		Psyr_3244	0.32	+0.2
3,885,136	+		Psyr_3244	0.32	+1.1
3,885,136	+		Psyr_3244	0.32	+1.1
3,885,137	-		Psyr_3244	0.32	+1.5
3,885,137	-		Psyr_3244	0.32	+1.3
3,885,137	-		Psyr_3244	0.32	+0.1
3,885,137	-		Psyr_3244	0.32	-0.5
3,885,137	-		Psyr_3244	0.32	+0.6
3,885,164	-		Psyr_3244	0.34	-1.4
3,885,180	+		Psyr_3244	0.35	-0.8
3,885,184	+		Psyr_3244	0.36	+2.9
3,885,260	+		Psyr_3244	0.41	-0.2
3,885,260	+		Psyr_3244	0.41	-1.7
3,885,261	-		Psyr_3244	0.41	+1.6
3,885,261	-		Psyr_3244	0.41	-1.8