Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2730

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
3,312,159	-		Psyr_2728	0.73	-0.7
3,312,327	+				-0.0
3,312,328	-				+1.0
3,312,328	-				+0.8
3,312,328	-				-1.3
3,312,371	+				+2.1
3,312,371	+				+1.0
3,312,371	+				+0.8
3,312,371	+				+2.7
3,312,372	-				-0.7
3,312,372	-				+1.0
3,312,372	-				-0.1
3,312,372	-				-0.3
3,312,372	-				+3.0
3,312,423	+				-1.3
3,312,424	-				+2.1
3,312,424	-				-1.8
3,312,512	+				+2.0
3,312,512	+				-1.8
3,312,512	+				+0.3
3,312,513	-				-2.5
3,312,513	-				-0.6
3,312,513	-				-0.6
3,312,513	-				+0.6
3,312,513	-				+0.4
3,312,521	+				-0.0
3,312,521	+				-2.5
3,312,521	+				+0.8
3,312,521	+				-0.5
3,312,521	-				-2.2
3,312,522	-				+2.5
3,312,525	+				-2.5
3,312,525	+				-1.8
3,312,526	-				-2.0
3,313,071	-				-0.7
3,313,071	-				-0.6
3,313,071	-				-0.0
3,313,130	+				-0.1
3,313,130	+				-2.6
3,313,130	+				+0.1
3,313,130	+				-3.1
3,313,131	-				-0.5
3,313,131	-				-1.6
3,313,131	-				+0.3
3,313,131	-				+0.0
3,313,196	+				+0.3
3,313,196	+				+0.3
3,313,197	-				+0.1
3,313,254	-		Psyr_2730	0.11	+1.4
3,313,334	+		Psyr_2730	0.17	+0.1
3,313,334	+		Psyr_2730	0.17	-0.0
3,313,335	-		Psyr_2730	0.17	+0.6
3,313,383	-		Psyr_2730	0.21	+1.8
3,313,388	+		Psyr_2730	0.21	+1.4
3,313,388	+		Psyr_2730	0.21	-0.4
3,313,388	+		Psyr_2730	0.21	+2.0
3,313,388	+		Psyr_2730	0.21	+1.3
3,313,388	+		Psyr_2730	0.21	+0.7
3,313,389	-		Psyr_2730	0.21	-2.9
3,313,389	-		Psyr_2730	0.21	+0.4
3,313,389	-		Psyr_2730	0.21	+1.1
3,313,389	-		Psyr_2730	0.21	+1.4
3,313,389	-		Psyr_2730	0.21	-0.0
3,313,392	+		Psyr_2730	0.21	+1.5
3,313,392	+		Psyr_2730	0.21	-3.3
3,313,393	-		Psyr_2730	0.21	+1.6
3,313,393	-		Psyr_2730	0.21	-1.0
3,313,393	-		Psyr_2730	0.21	-0.9
3,313,393	-		Psyr_2730	0.21	+1.7
3,313,478	+		Psyr_2730	0.28	-1.7
3,313,478	+		Psyr_2730	0.28	+1.5
3,313,478	+		Psyr_2730	0.28	-0.3
3,313,478	+		Psyr_2730	0.28	-0.8
3,313,479	-		Psyr_2730	0.28	+2.2
3,313,479	-		Psyr_2730	0.28	+3.9
3,313,479	-		Psyr_2730	0.28	-1.3
3,313,511	+		Psyr_2730	0.30	+2.6
3,313,512	-		Psyr_2730	0.30	-0.1
3,313,691	+		Psyr_2730	0.44	-0.2
3,313,692	-		Psyr_2730	0.44	+1.8
3,313,692	-		Psyr_2730	0.44	+3.3
3,313,702	+		Psyr_2730	0.45	-2.2
3,313,715	+		Psyr_2730	0.46	-2.3
3,313,715	+		Psyr_2730	0.46	+2.6
3,313,716	-		Psyr_2730	0.46	-3.3
3,313,716	-		Psyr_2730	0.46	-1.3
3,313,763	+		Psyr_2730	0.49	+1.0
3,313,764	-		Psyr_2730	0.49	+4.6
3,313,832	+		Psyr_2730	0.54	-1.8
3,313,833	-		Psyr_2730	0.55	-1.3
3,313,833	-		Psyr_2730	0.55	-0.3
3,313,833	-		Psyr_2730	0.55	-1.8
3,313,894	+		Psyr_2730	0.59	-0.9
3,313,894	+		Psyr_2730	0.59	+2.0
3,313,894	+		Psyr_2730	0.59	-0.3
3,313,894	+		Psyr_2730	0.59	+0.6
3,313,894	+		Psyr_2730	0.59	+1.7
3,313,894	+		Psyr_2730	0.59	-1.7
3,313,894	+		Psyr_2730	0.59	-1.0
3,313,894	+		Psyr_2730	0.59	-0.0
3,313,894	+		Psyr_2730	0.59	+0.8
3,313,894	+		Psyr_2730	0.59	+0.4
3,313,894	+		Psyr_2730	0.59	+1.1
3,313,894	+		Psyr_2730	0.59	-1.8
3,313,894	+		Psyr_2730	0.59	-1.8
3,313,894	+		Psyr_2730	0.59	+1.0
3,313,894	+		Psyr_2730	0.59	+1.2
3,313,894	+		Psyr_2730	0.59	-2.3
3,313,894	+		Psyr_2730	0.59	-1.6
3,313,894	+		Psyr_2730	0.59	+2.1
3,313,894	+		Psyr_2730	0.59	-0.7
3,313,894	+		Psyr_2730	0.59	+0.1
3,313,894	+		Psyr_2730	0.59	-0.4
3,313,894	+		Psyr_2730	0.59	+0.8
3,313,895	-		Psyr_2730	0.59	-1.6
3,313,895	-		Psyr_2730	0.59	+0.7
3,313,895	-		Psyr_2730	0.59	+3.8
3,313,895	-		Psyr_2730	0.59	+0.7
3,313,895	-		Psyr_2730	0.59	-0.6
3,313,895	-		Psyr_2730	0.59	+1.4
3,313,895	-		Psyr_2730	0.59	+3.2
3,313,895	-		Psyr_2730	0.59	-0.6
3,313,895	-		Psyr_2730	0.59	+2.0
3,313,895	-		Psyr_2730	0.59	+1.5
3,313,895	-		Psyr_2730	0.59	+0.8
3,314,045	+		Psyr_2730	0.71	-0.4
3,314,046	-		Psyr_2730	0.71	+2.8
3,314,249	+		Psyr_2730	0.86	+1.7
3,314,249	+		Psyr_2730	0.86	-1.6
3,314,249	+		Psyr_2730	0.86	+0.4
3,314,250	-		Psyr_2730	0.86	+3.3
3,314,250	-		Psyr_2730	0.86	+1.0
3,314,250	-		Psyr_2730	0.86	+0.6
3,314,262	+		Psyr_2730	0.87	+2.0
3,314,262	+		Psyr_2730	0.87	-0.0
3,314,263	-		Psyr_2730	0.87	+1.4
3,314,263	-		Psyr_2730	0.87	-0.6
3,314,263	-		Psyr_2730	0.87	+2.8
3,314,264	+		Psyr_2730	0.87	+1.4
3,314,264	+		Psyr_2730	0.87	-3.5
3,314,264	+		Psyr_2730	0.87	+0.3
3,314,264	+		Psyr_2730	0.87	+1.5
3,314,264	+		Psyr_2730	0.87	-2.7
3,314,264	+		Psyr_2730	0.87	-0.0
3,314,264	+		Psyr_2730	0.87	+1.0
3,314,264	+		Psyr_2730	0.87	+1.6
3,314,264	+		Psyr_2730	0.87	-0.6
3,314,265	-		Psyr_2730	0.87	-0.6
3,314,265	-		Psyr_2730	0.87	+0.8
3,314,265	-		Psyr_2730	0.87	-0.1
3,314,265	-		Psyr_2730	0.87	-1.6
3,314,265	-		Psyr_2730	0.87	+1.4
3,314,265	-		Psyr_2730	0.87	+0.1
3,314,265	-		Psyr_2730	0.87	-0.9
3,314,265	-		Psyr_2730	0.87	-2.2
3,314,265	-		Psyr_2730	0.87	+2.7
3,314,265	-		Psyr_2730	0.87	+0.8
3,314,265	-		Psyr_2730	0.87	-2.3
3,314,267	+		Psyr_2730	0.87	+1.4
3,314,268	-		Psyr_2730	0.87	+0.3
3,314,268	-		Psyr_2730	0.87	+1.4
3,314,268	-		Psyr_2730	0.87	-0.8
3,314,268	-		Psyr_2730	0.87	-0.6
3,314,268	-		Psyr_2730	0.87	-0.3
3,314,268	-		Psyr_2730	0.87	+1.3
3,314,268	-		Psyr_2730	0.87	-1.5
3,314,448	+				-0.2
3,314,448	+				-2.0
3,314,448	+				-0.7
3,314,449	-				-1.0
3,314,449	-				-0.8
3,314,449	-				-0.4
3,314,809	+				-2.5
3,314,810	-				+0.3
3,315,041	+		Psyr_2731	0.23	-0.3
3,315,041	+		Psyr_2731	0.23	-3.2
3,315,041	+		Psyr_2731	0.23	-0.2
3,315,042	-		Psyr_2731	0.23	+1.3
3,315,179	+		Psyr_2731	0.34	-3.7
3,315,179	+		Psyr_2731	0.34	-0.8
3,315,180	-		Psyr_2731	0.34	+2.6
3,315,180	-		Psyr_2731	0.34	+0.4
3,315,180	-		Psyr_2731	0.34	-1.2
3,315,285	+		Psyr_2731	0.43	+1.7
3,315,426	-		Psyr_2731	0.54	-0.6
3,315,426	-		Psyr_2731	0.54	+1.8