Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2658

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
3,227,377	+		Psyr_2657	0.11	+0.4
3,227,377	+				+1.0
3,227,378	-		Psyr_2657	0.12	+1.4
3,227,378	-		Psyr_2657	0.12	-2.6
3,227,378	-		Psyr_2657	0.12	-2.3
3,227,378	-		Psyr_2657	0.12	+2.8
3,227,378	-		Psyr_2657	0.12	-3.2
3,227,378	-		Psyr_2657	0.12	+0.6
3,227,421	-		Psyr_2657	0.17	+0.7
3,227,451	+		Psyr_2657	0.20	-1.3
3,227,452	-		Psyr_2657	0.20	+1.6
3,227,503	+		Psyr_2657	0.26	-2.0
3,227,504	-		Psyr_2657	0.27	-2.0
3,227,617	+		Psyr_2657	0.40	+0.8
3,227,617	+		Psyr_2657	0.40	+0.4
3,227,617	+		Psyr_2657	0.40	-0.4
3,227,618	-		Psyr_2657	0.40	+0.5
3,227,618	-		Psyr_2657	0.40	-0.0
3,227,618	-		Psyr_2657	0.40	+0.6
3,227,705	+		Psyr_2657	0.50	-0.5
3,227,706	-		Psyr_2657	0.51	-2.2
3,227,803	+		Psyr_2657	0.62	-0.3
3,227,803	+		Psyr_2657	0.62	-1.6
3,227,817	+		Psyr_2657	0.64	-0.3
3,227,817	+		Psyr_2657	0.64	+0.3
3,227,817	+		Psyr_2657	0.64	-0.6
3,227,817	+		Psyr_2657	0.64	+1.1
3,227,817	+		Psyr_2657	0.64	-0.5
3,227,817	+		Psyr_2657	0.64	-2.5
3,227,817	+		Psyr_2657	0.64	+1.5
3,227,817	+		Psyr_2657	0.64	-0.1
3,227,817	+		Psyr_2657	0.64	-2.5
3,227,818	-		Psyr_2657	0.64	-2.8
3,227,818	-		Psyr_2657	0.64	-1.5
3,227,818	-		Psyr_2657	0.64	+0.4
3,227,818	-		Psyr_2657	0.64	+1.5
3,227,818	-		Psyr_2657	0.64	+0.8
3,227,818	-		Psyr_2657	0.64	-1.0
3,227,818	-		Psyr_2657	0.64	+2.3
3,227,829	+		Psyr_2657	0.65	-3.3
3,227,830	-		Psyr_2657	0.65	-0.6
3,227,830	-		Psyr_2657	0.65	+0.2
3,227,872	-		Psyr_2657	0.70	-1.6
3,227,872	-		Psyr_2657	0.70	-0.1
3,227,899	-		Psyr_2657	0.74	-1.3
3,228,013	+		Psyr_2657	0.87	-0.2
3,228,013	+		Psyr_2657	0.87	+0.3
3,228,027	+		Psyr_2657	0.89	-3.4
3,228,027	+		Psyr_2657	0.89	-1.8
3,228,028	-		Psyr_2657	0.89	-0.4
3,228,028	-		Psyr_2657	0.89	-1.3
3,228,063	+				-0.0
3,228,064	-				+0.9
3,228,160	+				-0.7
3,228,160	+				-2.5
3,228,161	-				-1.5
3,228,161	-				-2.0
3,228,223	-				+1.7
3,228,223	-				-0.5
3,228,232	+				+3.2
3,228,232	+				-0.1
3,228,232	+				-0.8
3,228,232	+				+0.4
3,228,232	+				-0.0
3,228,233	-				-0.8
3,228,233	-				+2.1
3,228,233	-				-1.1
3,228,233	-				+1.7
3,228,233	-				-0.0
3,228,233	-				+3.0
3,228,233	-				+1.2
3,228,233	-				-0.6
3,228,268	+				+0.6
3,228,268	+				+1.1
3,228,268	+				-2.2
3,228,268	+				-1.3
3,228,268	+				-0.1
3,228,268	+				+2.8
3,228,268	+				+1.0
3,228,269	-				+0.7
3,228,269	-				+0.6
3,228,269	-				+0.2
3,228,269	-				+0.4
3,228,269	-				+0.4
3,228,269	-				+1.0
3,228,269	-				+0.3
3,228,269	-				-1.8
3,228,269	-				+1.2
3,228,269	-				+0.3
3,228,304	+				+1.2
3,228,304	+				-2.6
3,228,304	+				-1.6
3,228,304	+				-1.6
3,228,304	+				+0.9
3,228,305	-				-2.0
3,228,305	-				+0.1
3,228,305	-				-0.5
3,228,305	-				-1.3
3,228,308	+				-2.2
3,228,368	-				-1.0
3,228,368	-				+0.5
3,228,405	-				-1.6
3,228,405	-				-2.0
3,228,405	-				-1.3
3,228,418	+				-0.0
3,228,418	+				+0.3
3,228,418	+				+0.3
3,228,418	+				+0.5
3,228,418	+				-1.0
3,228,419	-				-1.0
3,228,419	-				-0.7
3,228,421	+				-0.6
3,228,421	+				+1.9
3,228,421	+				-1.3
3,228,421	+				-0.6
3,228,421	+				+1.8
3,228,421	+				-0.6
3,228,422	-				+0.6
3,228,553	+		Psyr_2658	0.21	-1.0
3,228,554	-		Psyr_2658	0.21	-0.2
3,228,554	-		Psyr_2658	0.21	-1.8
3,228,584	+		Psyr_2658	0.23	+0.6
3,228,613	+		Psyr_2658	0.26	+0.7
3,228,830	-		Psyr_2658	0.45	-2.1
3,228,830	-		Psyr_2658	0.45	+0.5
3,228,873	-		Psyr_2658	0.49	+2.0
3,228,881	-		Psyr_2658	0.50	-0.7
3,228,976	+		Psyr_2658	0.58	+2.6
3,228,976	+		Psyr_2658	0.58	-0.4
3,228,976	+		Psyr_2658	0.58	-0.5
3,228,976	+		Psyr_2658	0.58	-2.2
3,228,976	+		Psyr_2658	0.58	+0.6
3,228,976	+		Psyr_2658	0.58	+0.4
3,228,976	+		Psyr_2658	0.58	-0.0
3,228,976	+		Psyr_2658	0.58	-1.9
3,228,976	+		Psyr_2658	0.58	+0.1
3,228,976	+		Psyr_2658	0.58	-1.0
3,228,977	-		Psyr_2658	0.58	+0.8
3,228,977	-		Psyr_2658	0.58	+0.9
3,228,977	-		Psyr_2658	0.58	+1.7
3,228,998	+		Psyr_2658	0.60	-0.5
3,228,999	-		Psyr_2658	0.60	-3.5
3,229,027	+		Psyr_2658	0.63	+2.4
3,229,028	-		Psyr_2658	0.63	-3.2
3,229,028	-		Psyr_2658	0.63	-2.3
3,229,028	-		Psyr_2658	0.63	+1.0
3,229,089	+		Psyr_2658	0.68	+1.3
3,229,121	+		Psyr_2658	0.71	+0.8
3,229,136	+		Psyr_2658	0.72	-0.7
3,229,136	+		Psyr_2658	0.72	-1.6
3,229,136	+		Psyr_2658	0.72	-3.0
3,229,137	-		Psyr_2658	0.72	-0.5
3,229,137	-		Psyr_2658	0.72	+1.0
3,229,137	-		Psyr_2658	0.72	-0.3
3,229,137	-		Psyr_2658	0.72	-0.8
3,229,137	-		Psyr_2658	0.72	-0.3
3,229,137	-		Psyr_2658	0.72	+0.5
3,229,144	+		Psyr_2658	0.73	-1.1
3,229,144	+		Psyr_2658	0.73	-0.5
3,229,144	+		Psyr_2658	0.73	-0.2
3,229,144	+		Psyr_2658	0.73	+2.1
3,229,144	+		Psyr_2658	0.73	-0.0
3,229,144	+		Psyr_2658	0.73	-2.2
3,229,145	-		Psyr_2658	0.73	+1.4
3,229,145	-		Psyr_2658	0.73	+0.9
3,229,145	-		Psyr_2658	0.73	-0.0
3,229,145	-		Psyr_2658	0.73	+0.8
3,229,145	-		Psyr_2658	0.73	+1.4
3,229,145	-		Psyr_2658	0.73	-2.2
3,229,145	-		Psyr_2658	0.73	+0.6
3,229,145	-		Psyr_2658	0.73	-0.9
3,229,145	-		Psyr_2658	0.73	-0.5
3,229,212	+		Psyr_2658	0.79	+0.4
3,229,213	-		Psyr_2658	0.79	+2.4
3,229,213	-		Psyr_2658	0.79	-0.4
3,229,213	-		Psyr_2658	0.79	-0.7
3,229,213	-		Psyr_2658	0.79	-0.5
3,229,213	-		Psyr_2658	0.79	-0.6
3,229,230	+		Psyr_2658	0.80	+0.3
3,229,231	-		Psyr_2658	0.81	-3.7
3,229,231	-		Psyr_2658	0.81	-0.2
3,229,236	+		Psyr_2658	0.81	-0.9
3,229,236	+		Psyr_2658	0.81	+1.1
3,229,236	+		Psyr_2658	0.81	-1.7
3,229,237	-		Psyr_2658	0.81	-0.1
3,229,237	-		Psyr_2658	0.81	-0.2
3,229,237	-		Psyr_2658	0.81	+0.6
3,229,237	-		Psyr_2658	0.81	-0.1
3,229,354	+				-1.2
3,229,354	+				+2.7
3,229,354	+				+1.0
3,229,355	-				-1.2
3,229,373	+				-0.6
3,229,373	+				-0.0
3,229,374	-				-0.2
3,229,374	-				-1.0
3,229,375	+				-2.3
3,229,411	+				-2.2
3,229,411	+				+1.7
3,229,411	+				-1.8
3,229,411	+				-1.3
3,229,412	-				-1.6
3,229,412	-				-2.2
3,229,482	+				-0.7
3,229,483	-				-2.5
3,229,483	-				+1.0
3,229,483	-				+0.6
3,229,483	-				-0.4
3,229,483	-				-1.4
3,229,483	-				-0.6
3,229,585	+				-0.4
3,229,586	-				-0.6
3,229,610	+				-1.3
3,229,610	+				+1.6
3,229,611	-				+2.3
3,229,611	-				-0.1
3,229,611	-				-0.8
3,229,611	-				-0.6
3,229,611	-				-1.9
3,229,631	-				+0.4
3,229,642	+				-3.3
3,229,651	-				-3.7
3,229,702	-				+0.5
3,229,702	-				-2.9
3,229,790	+				+1.3
3,229,791	-				+2.3
3,229,792	+				+2.3
3,229,792	+				+3.0
3,229,792	+				-0.0
3,229,792	+				-0.3
3,229,792	+				-1.3
3,229,792	+				-3.9
3,229,792	+				+2.1
3,229,792	+				+0.4
3,229,793	-				+2.3
3,229,793	-				-1.6
3,229,793	-				-2.7
3,229,793	-				+1.6
3,229,793	-				-1.3
3,229,804	+				+1.3
3,229,867	+				+0.4
3,229,867	+				-1.8
3,229,868	-				-1.8
3,229,869	+				+1.7
3,229,896	+				+0.2
3,229,897	-				-1.6
3,229,918	+				-0.4
3,229,918	+				+2.4
3,229,918	+				-0.6
3,229,918	+				+1.5
3,229,918	+				+2.7
3,229,919	-				-0.2
3,229,919	-				+0.6
3,229,919	-				-3.4
3,229,922	+				+0.9
3,229,922	+				+3.2
3,229,923	-				-0.1
3,229,951	+				-0.2
3,229,952	-				+0.7
3,230,017	-				-2.3
3,230,127	+				-1.0
3,230,127	+				+1.6
3,230,246	+		Psyr_2659	0.17	+0.1
3,230,246	+		Psyr_2659	0.17	-2.9
3,230,246	+		Psyr_2659	0.17	-1.6
3,230,247	-		Psyr_2659	0.17	-2.3
3,230,247	-		Psyr_2659	0.17	-1.9
3,230,247	-		Psyr_2659	0.17	-0.7
3,230,247	-		Psyr_2659	0.17	+0.4
3,230,250	+		Psyr_2659	0.17	+1.3
3,230,251	-		Psyr_2659	0.17	-0.7
3,230,263	+		Psyr_2659	0.18	-1.0
3,230,263	+		Psyr_2659	0.18	-2.0
3,230,342	+		Psyr_2659	0.24	+1.7
3,230,342	+		Psyr_2659	0.24	-1.5
3,230,342	+		Psyr_2659	0.24	-2.0
3,230,342	+		Psyr_2659	0.24	-2.9
3,230,342	+		Psyr_2659	0.24	+1.2
3,230,343	-		Psyr_2659	0.24	+2.6
3,230,361	+		Psyr_2659	0.26	+1.2
3,230,362	-		Psyr_2659	0.26	-2.0
3,230,379	+		Psyr_2659	0.27	-2.5
3,230,379	+		Psyr_2659	0.27	-3.3
3,230,379	+		Psyr_2659	0.27	+1.7
3,230,379	+		Psyr_2659	0.27	+2.1
3,230,380	-		Psyr_2659	0.27	-0.3
3,230,382	+		Psyr_2659	0.28	-0.6
3,230,383	-		Psyr_2659	0.28	-0.8
3,230,450	+		Psyr_2659	0.33	-1.3
3,230,451	-		Psyr_2659	0.33	-1.6