Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2322

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
2,697,550	+		Psyr_2321	0.49	+0.3
2,697,551	-		Psyr_2321	0.49	-1.9
2,697,682	-		Psyr_2321	0.58	-1.2
2,697,685	+		Psyr_2321	0.58	-0.3
2,697,685	+		Psyr_2321	0.58	-0.9
2,697,685	+		Psyr_2321	0.58	-2.7
2,697,686	-		Psyr_2321	0.58	-1.2
2,697,686	-		Psyr_2321	0.58	+0.3
2,697,691	+		Psyr_2321	0.58	-0.4
2,697,804	+		Psyr_2321	0.66	+1.1
2,697,916	+		Psyr_2321	0.73	+0.3
2,697,920	+		Psyr_2321	0.74	-0.5
2,697,922	+		Psyr_2321	0.74	-1.2
2,697,922	+		Psyr_2321	0.74	+0.5
2,697,970	+		Psyr_2321	0.77	-1.7
2,697,973	-		Psyr_2321	0.77	+1.5
2,698,000	-		Psyr_2321	0.79	-0.6
2,698,006	+		Psyr_2321	0.79	-2.1
2,698,061	+		Psyr_2321	0.83	+0.7
2,698,061	+		Psyr_2321	0.83	-1.6
2,698,061	+		Psyr_2321	0.83	+0.8
2,698,062	-		Psyr_2321	0.83	+0.6
2,698,067	+		Psyr_2321	0.83	-3.4
2,698,067	+		Psyr_2321	0.83	+0.3
2,698,067	+		Psyr_2321	0.83	-2.1
2,698,068	-		Psyr_2321	0.83	+1.9
2,698,124	+		Psyr_2321	0.87	+0.5
2,698,124	+				+1.5
2,698,130	+		Psyr_2321	0.88	-0.7
2,698,130	+		Psyr_2321	0.88	-0.0
2,698,130	+		Psyr_2321	0.88	+1.4
2,698,130	+		Psyr_2321	0.88	+0.9
2,698,131	-		Psyr_2321	0.88	-0.8
2,698,131	-		Psyr_2321	0.88	-0.5
2,698,177	+				-0.1
2,698,177	+				-1.7
2,698,237	-				+1.7
2,698,262	+				-0.7
2,698,262	+				-3.3
2,698,262	+				+1.1
2,698,262	+				+0.4
2,698,262	+				-0.6
2,698,262	+				+0.7
2,698,262	+				-0.2
2,698,262	+				-2.5
2,698,263	-				-1.7
2,698,264	+				-3.2
2,698,264	+				+2.3
2,698,264	+				+0.8
2,698,264	+				-1.1
2,698,264	+				-0.9
2,698,264	+				-1.9
2,698,264	-				-0.6
2,698,265	-				-0.1
2,698,265	-				+1.5
2,698,265	-				+0.4
2,698,265	-				+0.9
2,698,265	-				-0.3
2,698,265	-				+1.1
2,698,269	-				-0.4
2,698,324	+				-2.7
2,698,325	-				-0.2
2,698,373	+				-4.1
2,698,373	+				+0.1
2,698,373	+				-1.2
2,698,374	-				+0.9
2,698,374	-				+0.4
2,698,377	+				-0.6
2,698,377	+				+0.1
2,698,378	-				-1.5
2,698,432	+				-1.2
2,698,432	+				-0.5
2,698,432	+				-2.2
2,698,432	+				-1.7
2,698,432	+				+1.2
2,698,432	+				-1.1
2,698,432	+				-1.5
2,698,432	+				+0.0
2,698,433	-				+1.9
2,698,433	-				-2.2
2,698,433	-				-2.4
2,698,458	+				+0.4
2,698,458	+				-0.4
2,698,458	+				+1.2
2,698,504	+				-2.8
2,698,504	+				+1.1
2,698,505	-				-2.6
2,698,505	-				+1.1
2,698,524	+				+0.1
2,698,525	-				-2.4
2,698,525	-				-0.0
2,698,527	+				-0.7
2,698,527	+				-3.0
2,698,527	+				-0.3
2,698,527	+				-2.5
2,698,528	-				-0.0
2,698,528	-				+0.8
2,698,528	-				-0.8
2,698,528	-				+0.5
2,698,528	-				+2.1
2,698,528	-				+2.1
2,698,556	-				+1.3
2,698,634	-		Psyr_2322	0.11	+0.3
2,698,634	-		Psyr_2322	0.11	-2.7
2,698,663	-		Psyr_2322	0.12	-1.5
2,698,687	+		Psyr_2322	0.13	+0.8
2,698,688	-		Psyr_2322	0.13	+1.1
2,698,693	+		Psyr_2322	0.13	+0.5
2,698,693	+		Psyr_2322	0.13	-0.8
2,698,750	+		Psyr_2322	0.15	-1.7
2,698,751	-		Psyr_2322	0.15	+0.5
2,698,751	-		Psyr_2322	0.15	+0.3
2,698,751	-		Psyr_2322	0.15	-1.5
2,698,751	-		Psyr_2322	0.15	+0.8
2,698,751	-		Psyr_2322	0.15	+0.2
2,698,751	-		Psyr_2322	0.15	-0.9
2,698,756	+		Psyr_2322	0.15	+0.2
2,698,756	+		Psyr_2322	0.15	-2.2
2,698,756	+		Psyr_2322	0.15	-1.9
2,698,756	+		Psyr_2322	0.15	+1.5
2,698,756	+		Psyr_2322	0.15	+1.3
2,698,757	-		Psyr_2322	0.15	-1.7
2,698,757	-		Psyr_2322	0.15	-1.7
2,698,757	-		Psyr_2322	0.15	-0.2
2,698,757	-		Psyr_2322	0.15	-0.1
2,698,757	-		Psyr_2322	0.15	+1.1
2,698,788	+		Psyr_2322	0.16	-2.5
2,698,813	+		Psyr_2322	0.17	-0.9
2,698,813	+		Psyr_2322	0.17	+2.3
2,698,814	-		Psyr_2322	0.17	-0.6
2,698,814	-		Psyr_2322	0.17	-0.0
2,698,814	-		Psyr_2322	0.17	-1.4
2,698,814	-		Psyr_2322	0.17	-2.4
2,698,814	-		Psyr_2322	0.17	-0.7
2,698,895	+		Psyr_2322	0.20	+1.3
2,698,895	+		Psyr_2322	0.20	+0.9
2,698,895	+		Psyr_2322	0.20	+2.7
2,698,896	-		Psyr_2322	0.20	-0.5
2,698,896	-		Psyr_2322	0.20	+3.3
2,698,896	-		Psyr_2322	0.20	-1.5
2,698,907	+		Psyr_2322	0.21	-2.7
2,698,907	+		Psyr_2322	0.21	-2.8
2,698,908	-		Psyr_2322	0.21	-0.5
2,698,908	-		Psyr_2322	0.21	+0.1
2,698,908	-		Psyr_2322	0.21	-1.0
2,698,908	-		Psyr_2322	0.21	+0.3
2,698,908	-		Psyr_2322	0.21	-0.5
2,699,037	+				-0.9
2,699,037	+		Psyr_2322	0.25	+0.5
2,699,143	+		Psyr_2322	0.29	-2.7
2,699,144	-		Psyr_2322	0.29	-0.4
2,699,144	-		Psyr_2322	0.29	+1.4
2,699,144	-		Psyr_2322	0.29	+1.8
2,699,144	-		Psyr_2322	0.29	-1.6
2,699,149	+		Psyr_2322	0.29	-1.0
2,699,149	+		Psyr_2322	0.29	-1.9
2,699,150	-		Psyr_2322	0.29	+1.4
2,699,150	-		Psyr_2322	0.29	+0.1
2,699,150	-		Psyr_2322	0.29	-0.1
2,699,160	-		Psyr_2322	0.30	+1.4
2,699,160	-		Psyr_2322	0.30	+1.9
2,699,206	+		Psyr_2322	0.32	-1.7
2,699,206	+		Psyr_2322	0.32	+0.9
2,699,206	+		Psyr_2322	0.32	-2.4
2,699,206	+		Psyr_2322	0.32	+1.3
2,699,206	+		Psyr_2322	0.32	-1.5
2,699,206	+		Psyr_2322	0.32	-0.8
2,699,206	+		Psyr_2322	0.32	+0.7
2,699,206	+		Psyr_2322	0.32	-0.6
2,699,213	-		Psyr_2322	0.32	-0.5
2,699,269	+		Psyr_2322	0.34	-1.2
2,699,344	+		Psyr_2322	0.37	-3.2
2,699,393	+		Psyr_2322	0.38	-3.4
2,699,394	-		Psyr_2322	0.38	-1.2
2,699,419	+		Psyr_2322	0.39	+0.8
2,699,419	+		Psyr_2322	0.39	-1.9
2,699,419	+		Psyr_2322	0.39	+0.9
2,699,419	+		Psyr_2322	0.39	+1.9
2,699,419	+		Psyr_2322	0.39	-2.6
2,699,419	+		Psyr_2322	0.39	-2.2
2,699,419	+		Psyr_2322	0.39	+0.7
2,699,419	+		Psyr_2322	0.39	-1.7
2,699,419	+		Psyr_2322	0.39	-3.4
2,699,419	+		Psyr_2322	0.39	+0.2
2,699,419	+		Psyr_2322	0.39	-2.1
2,699,419	+		Psyr_2322	0.39	+0.6
2,699,420	-		Psyr_2322	0.39	+0.7
2,699,420	-		Psyr_2322	0.39	-0.9
2,699,420	-		Psyr_2322	0.39	+0.3
2,699,420	-		Psyr_2322	0.39	-2.1
2,699,420	-		Psyr_2322	0.39	-4.2
2,699,420	-		Psyr_2322	0.39	-0.1
2,699,420	-		Psyr_2322	0.39	+0.9
2,699,420	-		Psyr_2322	0.39	+1.1
2,699,420	-		Psyr_2322	0.39	-1.2
2,699,421	+		Psyr_2322	0.39	+1.3
2,699,422	-		Psyr_2322	0.39	-0.2
2,699,422	-		Psyr_2322	0.39	-1.2
2,699,422	-		Psyr_2322	0.39	-0.4
2,699,422	-		Psyr_2322	0.39	-0.3
2,699,425	+		Psyr_2322	0.39	-1.0
2,699,425	+		Psyr_2322	0.39	+2.1
2,699,426	-		Psyr_2322	0.40	-0.9
2,699,426	-		Psyr_2322	0.40	+0.1
2,699,485	+		Psyr_2322	0.42	-0.5
2,699,486	-		Psyr_2322	0.42	+2.1
2,699,488	+		Psyr_2322	0.42	+1.8
2,699,489	-				+4.0
2,699,503	+		Psyr_2322	0.42	+2.4
2,699,504	-		Psyr_2322	0.42	-2.4
2,699,504	-		Psyr_2322	0.42	+1.2
2,699,504	-		Psyr_2322	0.42	+0.5
2,699,591	+		Psyr_2322	0.46	-1.7
2,699,591	+		Psyr_2322	0.46	-1.5
2,699,592	-		Psyr_2322	0.46	+1.1
2,699,640	+		Psyr_2322	0.47	+0.1
2,699,641	-		Psyr_2322	0.47	+1.8
2,699,641	-		Psyr_2322	0.47	+1.0
2,699,670	+		Psyr_2322	0.48	+1.8
2,699,670	+		Psyr_2322	0.48	-3.2
2,699,713	+		Psyr_2322	0.50	-3.4
2,699,713	+		Psyr_2322	0.50	-1.8
2,699,713	+		Psyr_2322	0.50	-3.6
2,699,713	+		Psyr_2322	0.50	-1.2
2,699,713	+		Psyr_2322	0.50	+0.3
2,699,713	+		Psyr_2322	0.50	-2.6
2,699,713	+		Psyr_2322	0.50	-0.9
2,699,714	-		Psyr_2322	0.50	+0.2
2,699,714	-		Psyr_2322	0.50	+1.8
2,699,714	-		Psyr_2322	0.50	-1.9
2,699,726	-		Psyr_2322	0.50	+1.2
2,699,767	+		Psyr_2322	0.52	+1.1
2,699,768	-		Psyr_2322	0.52	-2.5
2,699,773	+		Psyr_2322	0.52	+2.0
2,699,836	+		Psyr_2322	0.54	-1.7
2,699,836	+		Psyr_2322	0.54	+0.5
2,699,837	-		Psyr_2322	0.55	+1.1
2,699,837	-		Psyr_2322	0.55	-0.3
2,699,891	-		Psyr_2322	0.56	-1.2
2,699,977	+		Psyr_2322	0.60	-1.7
2,699,977	+		Psyr_2322	0.60	-2.2
2,699,977	+		Psyr_2322	0.60	-0.2
2,699,977	+		Psyr_2322	0.60	-0.3
2,699,977	+		Psyr_2322	0.60	-2.1
2,699,978	-		Psyr_2322	0.60	+1.1
2,699,978	-		Psyr_2322	0.60	+1.0
2,699,978	-		Psyr_2322	0.60	-2.6
2,700,076	+		Psyr_2322	0.63	-2.1
2,700,077	-		Psyr_2322	0.63	-1.7
2,700,122	-		Psyr_2322	0.65	-3.6
2,700,136	+		Psyr_2322	0.65	-3.2
2,700,137	-		Psyr_2322	0.65	+1.4
2,700,142	+		Psyr_2322	0.66	+0.1
2,700,142	+		Psyr_2322	0.66	+0.3
2,700,142	+		Psyr_2322	0.66	+0.3
2,700,142	+		Psyr_2322	0.66	+0.6
2,700,143	-		Psyr_2322	0.66	+2.3
2,700,143	-		Psyr_2322	0.66	-2.5
2,700,143	-		Psyr_2322	0.66	-2.9
2,700,143	-		Psyr_2322	0.66	+1.7
2,700,143	-		Psyr_2322	0.66	+1.1
2,700,178	+		Psyr_2322	0.67	-3.1
2,700,179	-		Psyr_2322	0.67	-0.2
2,700,217	+		Psyr_2322	0.68	-1.3
2,700,218	-		Psyr_2322	0.68	+0.1
2,700,218	-		Psyr_2322	0.68	-1.9
2,700,218	-		Psyr_2322	0.68	-1.7
2,700,218	-		Psyr_2322	0.68	-1.7
2,700,218	-		Psyr_2322	0.68	-1.5
2,700,257	+		Psyr_2322	0.70	-0.5
2,700,257	+				+3.9
2,700,257	+		Psyr_2322	0.70	-2.1
2,700,257	+		Psyr_2322	0.70	+1.2
2,700,257	+		Psyr_2322	0.70	+1.1
2,700,258	-		Psyr_2322	0.70	+2.2
2,700,258	-		Psyr_2322	0.70	-2.1
2,700,259	+		Psyr_2322	0.70	-0.2
2,700,259	+		Psyr_2322	0.70	-0.7
2,700,259	+		Psyr_2322	0.70	-1.5
2,700,259	+		Psyr_2322	0.70	+0.7
2,700,259	+		Psyr_2322	0.70	+0.2
2,700,259	+		Psyr_2322	0.70	-0.5
2,700,260	-		Psyr_2322	0.70	+2.2
2,700,260	-		Psyr_2322	0.70	-2.5
2,700,260	-		Psyr_2322	0.70	-0.4
2,700,260	-		Psyr_2322	0.70	+0.1
2,700,260	-		Psyr_2322	0.70	-0.9
2,700,260	-		Psyr_2322	0.70	-1.6
2,700,359	+		Psyr_2322	0.74	+1.8
2,700,379	+		Psyr_2322	0.74	-1.0
2,700,380	-		Psyr_2322	0.74	-0.4
2,700,380	-		Psyr_2322	0.74	-0.3
2,700,568	+		Psyr_2322	0.81	+2.1
2,700,568	+		Psyr_2322	0.81	-1.5
2,700,570	+		Psyr_2322	0.81	-2.5
2,700,574	+		Psyr_2322	0.81	+1.8
2,700,574	+		Psyr_2322	0.81	+0.9
2,700,575	-		Psyr_2322	0.81	-3.1
2,700,575	-		Psyr_2322	0.81	-0.0
2,700,575	-		Psyr_2322	0.81	-0.9
2,700,577	+		Psyr_2322	0.82	-1.2
2,700,586	+		Psyr_2322	0.82	+2.5
2,700,607	+		Psyr_2322	0.83	-0.4
2,700,652	+		Psyr_2322	0.84	-0.8
2,700,652	+		Psyr_2322	0.84	+1.2
2,700,652	+		Psyr_2322	0.84	+0.9
2,700,653	-		Psyr_2322	0.84	-0.1
2,700,653	-		Psyr_2322	0.84	+0.7
2,700,658	+		Psyr_2322	0.84	-1.5
2,700,658	+		Psyr_2322	0.84	-0.5
2,700,659	-		Psyr_2322	0.85	-0.5
2,700,659	-		Psyr_2322	0.85	-1.9
2,700,675	+		Psyr_2322	0.85	+0.2
2,700,676	-		Psyr_2322	0.85	+0.7
2,700,716	+		Psyr_2322	0.87	-2.4
2,700,803	+		Psyr_2322	0.90	+0.1
2,700,804	-		Psyr_2322	0.90	-1.1
2,700,854	-				+2.3
2,700,924	+				+1.8
2,700,959	-				+0.2
2,701,013	-				-0.0
2,701,020	+				+1.6
2,701,603	+				+0.3
2,701,604	-				-1.5
2,701,604	-				+1.1
2,701,669	+				-0.5
2,701,669	+				-1.4
2,701,737	+				-1.2
2,701,741	-				+1.1
2,701,741	-				+1.9
2,701,820	+				-1.2
2,701,821	-				+1.1
2,701,821	-				-3.4
2,701,827	+				-1.7
2,701,828	-				-2.1
2,701,828	-				-0.0
2,701,828	-				-0.0
2,701,946	+				-2.4
2,701,947	-				+2.4
2,701,947	-				-2.2
2,701,961	+				-2.1
2,701,961	+				+0.2
2,701,961	+				+0.9
2,702,009	+				+0.7
2,702,032	+				-1.9
2,702,037	-				+0.6