Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1537

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,726,549	+		Psyr_1536	0.46	-0.4
1,726,676	+		Psyr_1536	0.53	+0.0
1,726,676	+		Psyr_1536	0.53	-2.0
1,726,677	-		Psyr_1536	0.53	-1.8
1,726,747	+		Psyr_1536	0.57	+0.4
1,726,748	-		Psyr_1536	0.57	-1.4
1,726,769	+		Psyr_1536	0.59	-1.6
1,726,770	-		Psyr_1536	0.59	+2.0
1,726,776	-		Psyr_1536	0.59	+0.5
1,727,022	+		Psyr_1536	0.74	-2.8
1,727,023	-		Psyr_1536	0.74	-0.6
1,727,023	-		Psyr_1536	0.74	-2.2
1,727,023	-		Psyr_1536	0.74	+1.6
1,727,023	-		Psyr_1536	0.74	+1.4
1,727,087	-		Psyr_1536	0.78	+0.5
1,727,130	+		Psyr_1536	0.80	+0.5
1,727,131	-		Psyr_1536	0.80	+1.9
1,727,154	+		Psyr_1536	0.82	-0.8
1,727,154	+		Psyr_1536	0.82	+1.4
1,727,155	-		Psyr_1536	0.82	+1.4
1,727,163	+		Psyr_1536	0.82	-0.6
1,727,164	-		Psyr_1536	0.82	-1.8
1,727,167	+		Psyr_1536	0.82	+0.2
1,727,167	+		Psyr_1536	0.82	-1.6
1,727,167	+		Psyr_1536	0.82	-0.2
1,727,167	+		Psyr_1536	0.82	+1.0
1,727,167	+		Psyr_1536	0.82	-0.9
1,727,167	+		Psyr_1536	0.82	+1.4
1,727,167	+		Psyr_1536	0.82	+2.2
1,727,167	+		Psyr_1536	0.82	+0.4
1,727,167	+		Psyr_1536	0.82	-3.2
1,727,167	+		Psyr_1536	0.82	+1.4
1,727,167	+		Psyr_1536	0.82	-1.2
1,727,167	+		Psyr_1536	0.82	-2.6
1,727,167	+		Psyr_1536	0.82	-1.7
1,727,167	+		Psyr_1536	0.82	-2.4
1,727,167	+		Psyr_1536	0.82	-0.3
1,727,167	+		Psyr_1536	0.82	-1.9
1,727,167	+		Psyr_1536	0.82	+1.1
1,727,167	+		Psyr_1536	0.82	-2.0
1,727,167	+		Psyr_1536	0.82	-0.7
1,727,167	+		Psyr_1536	0.82	+0.7
1,727,167	+		Psyr_1536	0.82	+1.2
1,727,167	+		Psyr_1536	0.82	-1.9
1,727,168	-		Psyr_1536	0.83	-0.9
1,727,168	-		Psyr_1536	0.83	-3.1
1,727,168	-		Psyr_1536	0.83	+0.5
1,727,168	-		Psyr_1536	0.83	+0.9
1,727,168	-		Psyr_1536	0.83	+0.6
1,727,168	-		Psyr_1536	0.83	-0.2
1,727,168	-		Psyr_1536	0.83	-1.5
1,727,168	-		Psyr_1536	0.83	+0.5
1,727,168	-		Psyr_1536	0.83	+0.3
1,727,168	-		Psyr_1536	0.83	+2.1
1,727,168	-		Psyr_1536	0.83	-3.3
1,727,224	-		Psyr_1536	0.86	+1.4
1,727,304	+				+0.2
1,727,305	-				+1.4
1,727,435	+				-0.3
1,727,435	+				+0.4
1,727,435	+				-1.4
1,727,435	+				+1.9
1,727,435	+				-0.3
1,727,436	-				-2.3
1,727,436	-				-0.2
1,727,448	+				-0.0
1,727,457	+				+1.1
1,727,457	+				-2.0
1,727,458	-				-1.6
1,727,458	-				-2.4
1,727,479	+				-0.6
1,727,479	+				+1.8
1,727,480	-				-0.6
1,727,480	-				-3.2
1,727,481	+				+1.1
1,727,482	-				+3.4
1,727,482	-				+0.8
1,727,482	-				+3.6
1,727,482	-				+1.5
1,727,482	-				+0.8
1,727,482	-				-0.7
1,727,482	-				+0.3
1,727,495	+				+0.8
1,727,495	+				+1.6
1,727,675	+		Psyr_1537	0.13	-0.8
1,727,675	+		Psyr_1537	0.13	-0.0
1,727,676	-		Psyr_1537	0.13	+1.4
1,727,676	-		Psyr_1537	0.13	-0.5
1,727,676	-		Psyr_1537	0.13	-0.2
1,727,711	+		Psyr_1537	0.16	+0.9
1,727,711	+		Psyr_1537	0.16	+0.3
1,727,712	-		Psyr_1537	0.16	-0.9
1,727,712	-		Psyr_1537	0.16	-1.8
1,727,712	-		Psyr_1537	0.16	-2.6
1,727,712	-		Psyr_1537	0.16	+0.6
1,727,714	+		Psyr_1537	0.16	+1.1
1,727,714	+		Psyr_1537	0.16	-0.3
1,727,714	+		Psyr_1537	0.16	+0.3
1,727,714	+		Psyr_1537	0.16	-2.8
1,727,714	+		Psyr_1537	0.16	+0.5
1,727,714	+		Psyr_1537	0.16	+1.7
1,727,714	+		Psyr_1537	0.16	-2.2
1,727,714	+		Psyr_1537	0.16	+0.5
1,727,714	+		Psyr_1537	0.16	-3.5
1,727,714	+		Psyr_1537	0.16	-0.9
1,727,714	+		Psyr_1537	0.16	-1.8
1,727,715	-		Psyr_1537	0.16	+0.2
1,727,715	-		Psyr_1537	0.16	-0.9
1,727,715	-		Psyr_1537	0.16	+0.6
1,727,715	-		Psyr_1537	0.16	+0.6
1,727,715	-		Psyr_1537	0.16	+0.3
1,727,715	-		Psyr_1537	0.16	+0.0
1,727,770	+		Psyr_1537	0.20	+0.0
1,727,770	+		Psyr_1537	0.20	+1.3
1,727,770	+				+2.4
1,727,770	+		Psyr_1537	0.20	-0.3
1,727,771	-		Psyr_1537	0.21	-1.5
1,727,840	+		Psyr_1537	0.26	-1.6
1,727,841	-		Psyr_1537	0.26	-0.7
1,727,841	-		Psyr_1537	0.26	-0.2
1,727,841	-		Psyr_1537	0.26	-0.7
1,727,841	-		Psyr_1537	0.26	+0.0
1,727,841	-		Psyr_1537	0.26	+1.0
1,727,852	+		Psyr_1537	0.27	-3.0
1,727,852	+		Psyr_1537	0.27	-0.6
1,728,007	+		Psyr_1537	0.38	-1.1
1,728,014	-		Psyr_1537	0.39	-0.4
1,728,035	+		Psyr_1537	0.40	+1.0
1,728,095	+		Psyr_1537	0.45	-0.2
1,728,095	+		Psyr_1537	0.45	-0.9
1,728,096	-		Psyr_1537	0.45	-2.8
1,728,150	+		Psyr_1537	0.49	+0.6
1,728,151	-		Psyr_1537	0.49	-0.6
1,728,151	-		Psyr_1537	0.49	+1.4
1,728,373	-				+3.7
1,728,437	+		Psyr_1537	0.70	+0.1
1,728,437	+		Psyr_1537	0.70	+0.6
1,728,466	+		Psyr_1537	0.72	-2.5
1,728,467	-		Psyr_1537	0.72	-0.0
1,728,467	-		Psyr_1537	0.72	-1.4
1,728,505	+		Psyr_1537	0.75	-0.3
1,728,519	+		Psyr_1537	0.76	+0.2
1,728,519	+		Psyr_1537	0.76	+1.1
1,728,519	+		Psyr_1537	0.76	+1.1
1,728,520	-		Psyr_1537	0.76	-0.3
1,728,571	+		Psyr_1537	0.80	-1.2
1,728,571	+		Psyr_1537	0.80	+1.0
1,728,571	+		Psyr_1537	0.80	-0.6
1,728,571	+		Psyr_1537	0.80	+3.2
1,728,572	-		Psyr_1537	0.80	-3.8
1,728,572	-		Psyr_1537	0.80	+0.3
1,728,572	-		Psyr_1537	0.80	-0.8
1,728,587	+		Psyr_1537	0.81	+0.4
1,728,588	-		Psyr_1537	0.81	+1.0
1,728,588	-		Psyr_1537	0.81	+0.3
1,728,713	+				-0.9
1,728,713	+				+2.5
1,728,713	+				+0.4
1,728,713	+				-2.7
1,728,714	-				+0.4
1,728,714	-				-2.0
1,728,714	-				+2.6
1,728,714	-				+1.2
1,728,812	+				+0.2
1,728,812	+				-1.0
1,728,812	+				+0.6
1,728,812	+				-2.7
1,728,812	+				+2.4
1,728,813	-				-1.4
1,728,814	+				-2.0
1,728,814	+				-0.5
1,728,815	-				-0.3
1,728,815	-				+0.3
1,728,815	-				-1.0
1,728,815	-				-1.0
1,728,823	+				+1.9
1,728,823	+				+1.8
1,728,823	+				-2.3
1,728,823	+				+2.9
1,728,823	+				-0.3
1,728,823	+				-0.3
1,728,824	-				-2.5
1,728,824	-				+0.2
1,728,824	-				+2.0
1,728,824	-				+0.8
1,728,824	-				-0.1
1,728,826	+				-1.6
1,728,885	+				+1.0
1,728,886	-				-1.2
1,728,889	+				+0.5
1,728,890	-				-1.3
1,728,890	-				+1.7
1,728,941	+				-1.3
1,728,959	+				+3.4
1,728,960	-				+0.4
1,729,035	+				+3.6
1,729,035	+				+0.8
1,729,035	+				-0.6
1,729,035	+				-0.9
1,729,035	+				-2.3
1,729,035	+				+0.3
1,729,035	+				+1.2
1,729,035	+				+0.7
1,729,035	+				+0.7
1,729,035	+				+0.5
1,729,035	+				-1.8
1,729,035	+				+1.2
1,729,035	+				-0.9
1,729,035	+				+1.3
1,729,035	+				-3.6
1,729,035	+				-0.8
1,729,036	-				+0.9
1,729,036	-				+0.9
1,729,036	-				-1.4
1,729,036	-				+0.8
1,729,036	-				-0.5
1,729,036	-				+1.6
1,729,036	-				+0.5
1,729,036	-				-2.8
1,729,036	-				-0.3
1,729,036	-				+2.0
1,729,036	-				+2.9
1,729,036	-				+0.7
1,729,149	-		Psyr_1538	0.17	-1.1
1,729,149	-		Psyr_1538	0.17	+1.4
1,729,149	-		Psyr_1538	0.17	-1.0
1,729,152	+		Psyr_1538	0.17	+1.1
1,729,152	+		Psyr_1538	0.17	+0.9
1,729,152	+		Psyr_1538	0.17	-3.0
1,729,152	+		Psyr_1538	0.17	+0.0
1,729,153	-		Psyr_1538	0.17	-3.1
1,729,153	-		Psyr_1538	0.17	-0.1
1,729,153	-		Psyr_1538	0.17	+2.3
1,729,153	-		Psyr_1538	0.17	+1.1
1,729,154	+		Psyr_1538	0.17	+1.4
1,729,155	-		Psyr_1538	0.18	+0.6
1,729,163	+		Psyr_1538	0.18	+4.2
1,729,178	+		Psyr_1538	0.19	-0.4
1,729,200	-		Psyr_1538	0.21	-4.1
1,729,200	-		Psyr_1538	0.21	+1.7
1,729,223	+		Psyr_1538	0.23	+1.3
1,729,224	-		Psyr_1538	0.23	+1.1
1,729,345	+		Psyr_1538	0.31	+1.1
1,729,552	+		Psyr_1538	0.47	+0.9
1,729,552	+		Psyr_1538	0.47	+0.5
1,729,552	+		Psyr_1538	0.47	+0.4
1,729,552	+		Psyr_1538	0.47	+0.1
1,729,552	+		Psyr_1538	0.47	+0.2
1,729,552	+		Psyr_1538	0.47	-0.6
1,729,552	+		Psyr_1538	0.47	+3.1
1,729,552	+		Psyr_1538	0.47	+0.3
1,729,552	+		Psyr_1538	0.47	-0.6
1,729,552	+		Psyr_1538	0.47	+1.2
1,729,552	+		Psyr_1538	0.47	+1.7
1,729,552	+		Psyr_1538	0.47	+1.1
1,729,553	-		Psyr_1538	0.47	-0.6
1,729,553	-		Psyr_1538	0.47	-0.3
1,729,553	-		Psyr_1538	0.47	+0.6
1,729,553	-		Psyr_1538	0.47	+0.3
1,729,553	-		Psyr_1538	0.47	+0.3
1,729,553	-		Psyr_1538	0.47	-1.8
1,729,553	-		Psyr_1538	0.47	-2.8
1,729,553	-		Psyr_1538	0.47	-1.4
1,729,553	-		Psyr_1538	0.47	-1.8
1,729,554	+		Psyr_1538	0.47	+0.1
1,729,554	+		Psyr_1538	0.47	+1.3
1,729,554	+		Psyr_1538	0.47	+0.5
1,729,554	+		Psyr_1538	0.47	-1.1
1,729,581	+		Psyr_1538	0.49	+0.3
1,729,582	-		Psyr_1538	0.49	-1.7
1,729,582	-		Psyr_1538	0.49	+1.2
1,729,582	-		Psyr_1538	0.49	+1.0
1,729,640	+		Psyr_1538	0.53	-1.4
1,729,640	+		Psyr_1538	0.53	-0.2
1,729,641	-		Psyr_1538	0.53	+0.2
1,729,643	+		Psyr_1538	0.53	+1.4
1,729,644	-				-0.2
1,729,670	-		Psyr_1538	0.55	+0.9
1,729,670	-		Psyr_1538	0.55	+0.1
1,729,670	-		Psyr_1538	0.55	+0.8
1,729,732	+		Psyr_1538	0.60	-0.9
1,729,733	-		Psyr_1538	0.60	-0.3
1,729,809	+		Psyr_1538	0.65	+2.3
1,729,810	-		Psyr_1538	0.65	-0.7
1,729,810	-		Psyr_1538	0.65	+0.5
1,729,826	+		Psyr_1538	0.67	-0.8