Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1328

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,503,862	+		Psyr_1326	0.72	-0.4
1,503,862	+		Psyr_1326	0.72	+1.0
1,503,862	+		Psyr_1326	0.72	+2.5
1,503,862	+		Psyr_1326	0.72	+1.0
1,503,862	+		Psyr_1326	0.72	-2.1
1,503,862	+		Psyr_1326	0.72	+0.1
1,503,862	+		Psyr_1326	0.72	+0.1
1,503,862	+		Psyr_1326	0.72	-3.7
1,503,863	-		Psyr_1326	0.72	+0.5
1,503,863	-		Psyr_1326	0.72	-0.5
1,503,863	-		Psyr_1326	0.72	+1.0
1,503,863	-		Psyr_1326	0.72	+0.3
1,503,863	-		Psyr_1326	0.72	+0.2
1,503,863	-		Psyr_1326	0.72	+1.2
1,503,863	-		Psyr_1326	0.72	-1.1
1,503,863	-		Psyr_1326	0.72	+1.2
1,503,863	-		Psyr_1326	0.72	-1.7
1,503,863	-		Psyr_1326	0.72	-0.9
1,503,863	-		Psyr_1326	0.72	-0.7
1,504,128	-				+1.1
1,504,350	+		Psyr_1327	0.25	+0.7
1,504,351	-		Psyr_1327	0.26	+0.7
1,504,351	-		Psyr_1327	0.26	-0.4
1,504,356	+		Psyr_1327	0.27	+0.9
1,504,356	+		Psyr_1327	0.27	-2.2
1,504,388	+		Psyr_1327	0.36	+1.2
1,504,388	+		Psyr_1327	0.36	-1.7
1,504,388	+		Psyr_1327	0.36	-3.1
1,504,388	+		Psyr_1327	0.36	-0.8
1,504,388	+		Psyr_1327	0.36	-1.0
1,504,388	+		Psyr_1327	0.36	-3.9
1,504,389	-		Psyr_1327	0.36	-0.5
1,504,389	-		Psyr_1327	0.36	+3.0
1,504,389	-		Psyr_1327	0.36	+2.5
1,504,458	+		Psyr_1327	0.56	+1.6
1,504,458	+		Psyr_1327	0.56	+1.3
1,504,459	-		Psyr_1327	0.56	-1.9
1,504,568	+		Psyr_1327	0.87	+2.5
1,504,571	+		Psyr_1327	0.88	+0.7
1,504,571	+		Psyr_1327	0.88	-1.8
1,504,571	+		Psyr_1327	0.88	-0.9
1,504,571	+		Psyr_1327	0.88	+2.8
1,504,571	+		Psyr_1327	0.88	+0.3
1,504,592	-				-0.2
1,504,595	-				-1.5
1,504,623	+				-1.2
1,504,663	+				+0.1
1,504,663	+				+1.0
1,504,663	+				+2.0
1,504,663	+				-2.2
1,504,663	+				+1.2
1,504,682	+				-0.8
1,504,683	-				+0.8
1,504,683	-				+1.1
1,504,727	-				+0.3
1,504,864	+				-1.1
1,504,864	+				+4.1
1,504,864	+				-0.4
1,504,864	+				+1.5
1,504,896	+				+2.5
1,504,896	+				-2.1
1,505,074	+		Psyr_1328	0.14	-2.0
1,505,074	+		Psyr_1328	0.14	+1.9
1,505,074	+		Psyr_1328	0.14	+0.4
1,505,074	+		Psyr_1328	0.14	+1.3
1,505,074	+		Psyr_1328	0.14	-2.0
1,505,074	+		Psyr_1328	0.14	-2.4
1,505,074	+		Psyr_1328	0.14	-4.0
1,505,075	-		Psyr_1328	0.14	+0.1
1,505,075	-		Psyr_1328	0.14	-1.3
1,505,075	-		Psyr_1328	0.14	+1.0
1,505,125	-		Psyr_1328	0.16	-1.2
1,505,125	-		Psyr_1328	0.16	+1.3
1,505,158	+		Psyr_1328	0.17	+0.5
1,505,158	+		Psyr_1328	0.17	+0.1
1,505,293	+		Psyr_1328	0.23	-2.6
1,505,389	+		Psyr_1328	0.27	+1.5
1,505,392	+		Psyr_1328	0.27	-2.7
1,505,392	+		Psyr_1328	0.27	-0.0
1,505,392	+		Psyr_1328	0.27	-3.4
1,505,392	+		Psyr_1328	0.27	-2.9
1,505,392	+		Psyr_1328	0.27	+0.3
1,505,392	+		Psyr_1328	0.27	-0.5
1,505,392	+		Psyr_1328	0.27	+0.8
1,505,393	-		Psyr_1328	0.27	-1.1
1,505,393	-		Psyr_1328	0.27	+0.4
1,505,393	-		Psyr_1328	0.27	-2.6
1,505,393	-		Psyr_1328	0.27	+0.7
1,505,560	+		Psyr_1328	0.33	-0.4
1,505,560	+		Psyr_1328	0.33	+1.7
1,505,911	+		Psyr_1328	0.47	+1.6
1,505,911	+		Psyr_1328	0.47	+1.9
1,505,911	+		Psyr_1328	0.47	-0.9
1,505,911	+		Psyr_1328	0.47	-1.9
1,505,911	+		Psyr_1328	0.47	-0.2
1,505,911	+		Psyr_1328	0.47	+0.8
1,505,911	+		Psyr_1328	0.47	-0.3
1,505,911	+		Psyr_1328	0.47	+0.5
1,505,911	+		Psyr_1328	0.47	-0.1
1,505,911	+		Psyr_1328	0.47	-0.4
1,505,911	+		Psyr_1328	0.47	+0.6
1,505,911	+		Psyr_1328	0.47	-0.1
1,505,911	+		Psyr_1328	0.47	+2.7
1,505,911	+		Psyr_1328	0.47	+1.3
1,505,911	+		Psyr_1328	0.47	+1.3
1,505,911	+		Psyr_1328	0.47	-2.4
1,505,912	-		Psyr_1328	0.47	-3.1
1,505,912	-		Psyr_1328	0.47	-1.1
1,505,912	-		Psyr_1328	0.47	+1.7
1,505,912	-		Psyr_1328	0.47	+1.5
1,505,915	+		Psyr_1328	0.48	+0.1
1,505,915	+		Psyr_1328	0.48	+2.5
1,505,929	-		Psyr_1328	0.48	-0.6
1,505,939	-		Psyr_1328	0.49	+1.0
1,505,947	+		Psyr_1328	0.49	-0.3
1,505,947	+		Psyr_1328	0.49	-2.9
1,505,947	+		Psyr_1328	0.49	-2.5
1,505,947	+		Psyr_1328	0.49	+1.7
1,505,947	+		Psyr_1328	0.49	+0.5
1,505,948	-		Psyr_1328	0.49	-1.6
1,505,948	-		Psyr_1328	0.49	+1.2
1,505,948	-		Psyr_1328	0.49	+1.2
1,505,948	-		Psyr_1328	0.49	+1.8
1,506,070	+		Psyr_1328	0.54	-1.3
1,506,071	-		Psyr_1328	0.54	-0.7
1,506,109	+		Psyr_1328	0.55	-0.1
1,506,110	-		Psyr_1328	0.55	-1.3
1,506,128	+		Psyr_1328	0.56	-1.1
1,506,129	-		Psyr_1328	0.56	+0.9
1,506,130	+		Psyr_1328	0.56	-2.2
1,506,130	+		Psyr_1328	0.56	-0.2
1,506,131	-		Psyr_1328	0.56	+0.2
1,506,206	+		Psyr_1328	0.59	+1.7
1,506,206	+		Psyr_1328	0.59	-0.1
1,506,207	-		Psyr_1328	0.59	-1.4
1,506,266	-		Psyr_1328	0.62	-1.1
1,506,266	-		Psyr_1328	0.62	-0.3
1,506,310	+		Psyr_1328	0.63	-0.7
1,506,310	+		Psyr_1328	0.63	+1.0
1,506,310	+		Psyr_1328	0.63	+1.6
1,506,310	+		Psyr_1328	0.63	+1.5
1,506,310	+		Psyr_1328	0.63	+0.6
1,506,310	+				-0.1
1,506,310	+		Psyr_1328	0.63	+1.3
1,506,310	+		Psyr_1328	0.63	-0.5
1,506,311	-		Psyr_1328	0.63	-0.2
1,506,311	-		Psyr_1328	0.63	-3.4
1,506,311	-		Psyr_1328	0.63	-2.4
1,506,311	-		Psyr_1328	0.63	+0.3
1,506,311	-		Psyr_1328	0.63	+1.3
1,506,311	-		Psyr_1328	0.63	+1.5
1,506,311	-		Psyr_1328	0.63	+2.6
1,506,311	-		Psyr_1328	0.63	+0.7
1,506,311	-		Psyr_1328	0.63	+0.2
1,506,311	-		Psyr_1328	0.63	-3.3
1,506,311	-		Psyr_1328	0.63	-1.1
1,506,311	-		Psyr_1328	0.63	-0.8
1,506,311	-		Psyr_1328	0.63	+0.2
1,506,311	-		Psyr_1328	0.63	+1.3
1,506,311	-		Psyr_1328	0.63	+0.7
1,506,311	-		Psyr_1328	0.63	+0.8
1,506,376	+		Psyr_1328	0.66	-1.3
1,506,376	+		Psyr_1328	0.66	+0.6
1,506,376	+		Psyr_1328	0.66	+1.0
1,506,376	+		Psyr_1328	0.66	-3.4
1,506,377	-		Psyr_1328	0.66	+2.1
1,506,377	-		Psyr_1328	0.66	-0.9
1,506,430	+		Psyr_1328	0.68	+1.2
1,506,430	+		Psyr_1328	0.68	-1.5
1,506,430	+		Psyr_1328	0.68	-2.2
1,506,431	-		Psyr_1328	0.68	-3.6
1,506,431	-		Psyr_1328	0.68	-0.4
1,506,431	-		Psyr_1328	0.68	+0.8
1,506,431	-		Psyr_1328	0.68	-1.5
1,506,431	-		Psyr_1328	0.68	+0.3
1,506,436	+		Psyr_1328	0.68	+1.1
1,506,436	+		Psyr_1328	0.68	+0.5
1,506,436	+		Psyr_1328	0.68	-1.3
1,506,437	-		Psyr_1328	0.68	-0.2
1,506,437	-		Psyr_1328	0.68	+0.2
1,506,437	-		Psyr_1328	0.68	+2.2
1,506,762	+		Psyr_1328	0.81	-0.9
1,506,762	+		Psyr_1328	0.81	+0.3
1,506,763	-		Psyr_1328	0.81	-1.6
1,506,763	-		Psyr_1328	0.81	-1.5
1,506,970	+		Psyr_1328	0.90	-0.7
1,506,970	+		Psyr_1328	0.90	+0.5
1,506,970	+		Psyr_1328	0.90	+0.3
1,506,970	+		Psyr_1328	0.90	-0.6
1,506,971	-		Psyr_1328	0.90	-0.3
1,507,096	+				+1.7
1,507,096	+				+2.2
1,507,096	+				+0.1
1,507,096	+				+0.3
1,507,096	+				-0.4
1,507,096	+				-1.3
1,507,096	+				-0.8
1,507,096	+				-0.1
1,507,096	+				-3.9
1,507,097	-				+2.2
1,507,097	-				+1.1
1,507,097	-				+3.8
1,507,097	-				-0.4
1,507,097	-				+1.7
1,507,097	-				-2.9
1,507,097	-				-0.3
1,507,097	-				-3.3
1,507,097	-				-2.1
1,507,130	+				-2.2
1,507,130	+				-0.0
1,507,171	+				-2.2
1,507,171	+				+1.7
1,507,171	+				-2.3
1,507,171	+				+0.7
1,507,171	+				-0.5
1,507,172	-				-0.3
1,507,172	-				+0.4
1,507,172	-				-1.1
1,507,172	-				+2.2
1,507,172	-				+1.5
1,507,172	-				-0.2
1,507,172	-				-2.2
1,507,227	-				-0.1
1,507,379	+				+1.0
1,507,380	-				-0.1
1,507,380	-				+0.4
1,507,380	-				+1.6
1,507,423	-				+0.8
1,507,513	+		Psyr_1329	0.29	+0.1
1,507,513	+		Psyr_1329	0.29	-1.5
1,507,513	+		Psyr_1329	0.29	+0.5
1,507,513	+		Psyr_1329	0.29	-1.7
1,507,514	-		Psyr_1329	0.29	+1.9
1,507,514	-		Psyr_1329	0.29	+1.0
1,507,514	-		Psyr_1329	0.29	+1.6
1,507,514	-		Psyr_1329	0.29	-2.2
1,507,757	+				+0.6
1,507,757	+				-0.0
1,507,758	-				+1.9
1,507,803	+				-1.0
1,507,803	+				+1.5
1,507,803	+				-0.1
1,507,803	+				-0.7
1,507,804	-				+0.7
1,507,804	-				-0.8
1,507,804	-				-0.9
1,507,818	+				+1.0
1,507,819	-				+0.4
1,508,049	+		Psyr_1330	0.30	-0.1
1,508,049	+		Psyr_1330	0.30	+0.6
1,508,049	+		Psyr_1330	0.30	-0.7
1,508,050	-		Psyr_1330	0.31	-0.9
1,508,050	-		Psyr_1330	0.31	+1.3
1,508,050	-		Psyr_1330	0.31	-3.0