Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1159

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,310,930	+		Psyr_1158	0.45	-2.8
1,311,093	+		Psyr_1158	0.57	-0.1
1,311,094	-		Psyr_1158	0.57	+0.8
1,311,094	-		Psyr_1158	0.57	+0.8
1,311,368	+		Psyr_1158	0.77	-0.2
1,311,369	-		Psyr_1158	0.77	-2.5
1,311,451	+		Psyr_1158	0.83	+0.2
1,311,575	+				-1.3
1,311,696	-				+0.7
1,311,769	+				+0.1
1,311,769	+				+1.5
1,311,769	+				-0.0
1,311,810	+				+0.6
1,311,810	+				-0.5
1,311,852	+				-1.2
1,311,852	+				-1.7
1,311,852	+				-3.1
1,311,852	+				+0.3
1,311,852	+				+2.0
1,311,852	+				+0.2
1,311,852	+				+1.2
1,311,852	+				-3.5
1,311,852	+				+0.1
1,311,852	+				-0.1
1,311,852	+				+1.1
1,311,852	+				-0.9
1,311,853	-				+2.6
1,311,853	-				-2.5
1,311,853	-				+0.7
1,311,853	-				-1.9
1,311,853	-				+1.5
1,311,853	-				+2.0
1,311,853	-				-1.9
1,311,853	-				-1.1
1,311,853	-				+1.8
1,311,948	+				-1.5
1,311,948	+				-1.7
1,311,948	+				-0.2
1,311,948	+				-0.4
1,311,948	+				-0.5
1,311,948	+				+2.3
1,311,948	+				-0.9
1,311,949	-				+0.2
1,311,949	-				+0.6
1,311,949	-				+0.8
1,311,949	-				+0.4
1,311,949	-				+1.6
1,311,949	-				+1.1
1,311,949	-				+0.7
1,312,014	+		Psyr_1159	0.12	-0.8
1,312,014	+		Psyr_1159	0.12	+3.0
1,312,015	-		Psyr_1159	0.12	-1.7
1,312,153	+		Psyr_1159	0.19	-2.1
1,312,153	+		Psyr_1159	0.19	+1.0
1,312,331	-		Psyr_1159	0.26	+0.3
1,312,446	+		Psyr_1159	0.32	+0.6
1,312,446	+		Psyr_1159	0.32	+0.8
1,312,446	+		Psyr_1159	0.32	+1.5
1,312,446	+		Psyr_1159	0.32	+1.7
1,312,447	-		Psyr_1159	0.32	+1.5
1,312,458	+		Psyr_1159	0.32	-0.1
1,312,458	+		Psyr_1159	0.32	+0.5
1,312,458	+		Psyr_1159	0.32	+0.3
1,312,458	+		Psyr_1159	0.32	-2.1
1,312,459	-		Psyr_1159	0.32	-0.5
1,312,459	-		Psyr_1159	0.32	-0.8
1,312,590	+		Psyr_1159	0.38	+1.7
1,312,590	+		Psyr_1159	0.38	-2.2
1,312,590	+		Psyr_1159	0.38	+1.7
1,312,590	+		Psyr_1159	0.38	-1.3
1,312,590	+		Psyr_1159	0.38	+0.8
1,312,590	+		Psyr_1159	0.38	+1.7
1,312,591	-		Psyr_1159	0.38	+1.7
1,312,591	-		Psyr_1159	0.38	-1.5
1,312,591	-		Psyr_1159	0.38	+2.0
1,312,633	+		Psyr_1159	0.40	-0.5
1,312,634	-		Psyr_1159	0.40	+0.8
1,312,932	-		Psyr_1159	0.53	+1.0
1,312,958	-		Psyr_1159	0.54	-1.7
1,312,995	+		Psyr_1159	0.56	-0.6
1,312,995	+		Psyr_1159	0.56	+0.2
1,312,996	-		Psyr_1159	0.56	+3.7
1,313,040	+		Psyr_1159	0.58	-1.7
1,313,040	+		Psyr_1159	0.58	-0.5
1,313,040	+		Psyr_1159	0.58	-1.9
1,313,040	+		Psyr_1159	0.58	+0.3
1,313,040	+		Psyr_1159	0.58	+0.9
1,313,040	+		Psyr_1159	0.58	+0.8
1,313,040	+		Psyr_1159	0.58	-1.6
1,313,040	+		Psyr_1159	0.58	-3.9
1,313,041	-		Psyr_1159	0.58	-2.2
1,313,041	-		Psyr_1159	0.58	+0.7
1,313,041	-		Psyr_1159	0.58	-2.4
1,313,041	-		Psyr_1159	0.58	-1.9
1,313,041	-		Psyr_1159	0.58	+1.2
1,313,041	-		Psyr_1159	0.58	+0.0
1,313,041	-		Psyr_1159	0.58	+1.7
1,313,041	-		Psyr_1159	0.58	-1.7
1,313,041	-		Psyr_1159	0.58	+1.8
1,313,041	-		Psyr_1159	0.58	+3.1
1,313,041	-		Psyr_1159	0.58	+3.3
1,313,041	-		Psyr_1159	0.58	+0.8
1,313,041	-		Psyr_1159	0.58	+1.6
1,313,041	-		Psyr_1159	0.58	-0.3
1,313,309	-		Psyr_1159	0.70	+1.3
1,313,367	-		Psyr_1159	0.73	-1.3
1,313,367	-		Psyr_1159	0.73	-1.1
1,313,418	+		Psyr_1159	0.75	+0.1
1,313,425	+		Psyr_1159	0.75	-2.0
1,313,464	+		Psyr_1159	0.77	+0.7
1,313,571	+		Psyr_1159	0.82	-0.3
1,313,571	+		Psyr_1159	0.82	-0.4
1,313,572	-		Psyr_1159	0.82	+0.8
1,313,572	-		Psyr_1159	0.82	-2.2
1,313,575	+		Psyr_1159	0.82	-2.2
1,313,576	-		Psyr_1159	0.82	+1.2
1,313,576	-		Psyr_1159	0.82	-1.9
1,313,581	+		Psyr_1159	0.82	+1.6
1,313,581	+		Psyr_1159	0.82	+0.2
1,313,582	-		Psyr_1159	0.82	-3.1
1,313,582	-		Psyr_1159	0.82	-0.5
1,313,700	+		Psyr_1159	0.87	+2.4
1,313,700	+		Psyr_1159	0.87	-0.5
1,313,700	+		Psyr_1159	0.87	-2.2
1,313,700	+		Psyr_1159	0.87	+0.3
1,313,700	+		Psyr_1159	0.87	-3.0
1,313,700	+		Psyr_1159	0.87	+1.5
1,313,700	+		Psyr_1159	0.87	-1.0
1,313,701	-		Psyr_1159	0.87	+0.1
1,313,701	-		Psyr_1159	0.87	+0.6
1,313,701	-		Psyr_1159	0.87	+0.5
1,313,778	+				+1.1
1,313,967	+				-2.3
1,313,968	-				+3.0
1,314,041	-				-0.1
1,314,127	+				+2.5
1,314,127	+				-2.3
1,314,127	+				+0.8
1,314,127	+				+2.1
1,314,128	-				-0.5
1,314,128	-				+2.5
1,314,128	-				+0.7
1,314,128	-				-2.0
1,314,145	-				+0.6
1,314,233	+				+0.7
1,314,233	+				+0.7
1,314,233	+				-2.4
1,314,233	+				-2.3
1,314,233	+				+0.1
1,314,234	-				+2.1
1,314,234	-				+0.8
1,314,234	-				+0.0
1,314,234	-				+0.8
1,314,234	-				-2.1
1,314,234	-				+1.5
1,314,234	-				-0.2
1,314,234	-				-1.7
1,314,234	-				-2.7
1,314,234	-				-0.9
1,314,234	-				+0.7
1,314,234	-				+2.6
1,314,234	-				-0.1
1,314,234	-				+0.8
1,314,236	+				-2.1
1,314,236	+				+0.4
1,314,237	-				+0.7
1,314,237	-				+0.2
1,314,237	-				-2.8
1,314,237	-				+2.5
1,314,239	+				+0.5
1,314,239	+				-0.3
1,314,239	+				-1.9
1,314,239	+				+2.5
1,314,240	-				-0.3
1,314,240	-				+0.0
1,314,240	-				+1.5
1,314,240	-				+0.6
1,314,240	-				-2.2
1,314,287	-				-2.2
1,314,402	+				+1.6
1,314,402	+				+0.3
1,314,402	+				+1.5
1,314,402	+				+2.2
1,314,402	+				-2.3
1,314,403	-				-0.4
1,314,406	+				-0.5
1,314,406	+				-0.3
1,314,407	-				+1.6
1,314,457	+				-3.3
1,314,503	+				-1.3
1,314,503	+				+0.3
1,314,503	+				+0.2
1,314,503	+				+1.5
1,314,504	-				-1.5
1,314,504	-				-2.7
1,314,551	-				+0.8
1,314,575	-				-1.5
1,314,591	-				-1.3
1,314,815	+				-1.3
1,314,819	+				+2.0
1,314,820	-				-0.0
1,314,820	-				+0.5
1,314,830	+				-0.9
1,314,831	-				-0.1
1,314,831	-				-2.2
1,314,831	-				+2.3
1,314,875	+				+1.2
1,314,875	+				+1.8
1,314,876	-				-1.9
1,314,876	-				-1.5
1,314,876	-				-1.3
1,314,876	-				-2.8
1,314,876	-				+2.3
1,314,876	-				+0.9
1,314,876	-				+0.1
1,314,876	-				-1.0
1,314,896	-		Psyr_1160	0.12	+1.7
1,314,896	-		Psyr_1160	0.12	+3.8
1,314,901	+		Psyr_1160	0.12	-3.1
1,314,901	+		Psyr_1160	0.12	+2.3
1,314,902	-		Psyr_1160	0.13	+0.3
1,314,902	-		Psyr_1160	0.13	+1.2
1,314,948	+		Psyr_1160	0.19	-0.5
1,314,948	+		Psyr_1160	0.19	-0.5
1,314,948	+		Psyr_1160	0.19	-0.1
1,314,949	-		Psyr_1160	0.19	-0.9
1,314,950	+		Psyr_1160	0.19	+1.5
1,314,950	+		Psyr_1160	0.19	+1.2
1,314,950	+		Psyr_1160	0.19	+2.5
1,314,950	+		Psyr_1160	0.19	+0.7
1,314,950	+		Psyr_1160	0.19	+0.6
1,314,951	-		Psyr_1160	0.19	+1.3
1,314,951	-		Psyr_1160	0.19	+1.5
1,314,951	-		Psyr_1160	0.19	-3.1
1,314,951	-		Psyr_1160	0.19	+0.1
1,314,951	-		Psyr_1160	0.19	-0.9
1,314,951	-		Psyr_1160	0.19	-1.2
1,314,951	-		Psyr_1160	0.19	+0.3
1,314,951	-		Psyr_1160	0.19	+0.5
1,314,951	-		Psyr_1160	0.19	-2.6