Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1121

Experiment: epiphytic; Lima bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1120 and Psyr_1121 overlap by 14 nucleotidesPsyr_1121 and Psyr_1122 are separated by 36 nucleotidesPsyr_1122 and Psyr_1123 are separated by 127 nucleotides Psyr_1120: Psyr_1120 - glucose-6-phosphate 1-dehydrogenase, at 1,269,242 to 1,270,711 _1120 Psyr_1121: Psyr_1121 - 6-phosphogluconolactonase, at 1,270,698 to 1,271,411 _1121 Psyr_1122: Psyr_1122 - 2-keto-3-deoxy-phosphogluconate aldolase, at 1,271,448 to 1,272,122 _1122 Psyr_1123: Psyr_1123 - conserved hypothetical protein, at 1,272,250 to 1,272,489 _1123 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1269.767 kb on + strand, within Psyr_1120at 1269.767 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.850 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.861 kb on + strand, within Psyr_1120at 1269.908 kb on + strand, within Psyr_1120at 1270.097 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.235 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.307 kb on + strand, within Psyr_1120at 1270.469 kb on + strand, within Psyr_1120at 1270.470 kb on - strand, within Psyr_1120at 1270.496 kb on + strand, within Psyr_1120at 1270.496 kb on + strand, within Psyr_1120at 1270.496 kb on + strand, within Psyr_1120at 1270.497 kb on - strand, within Psyr_1120at 1270.565 kb on + strandat 1270.697 kb on + strandat 1271.031 kb on + strand, within Psyr_1121at 1271.101 kb on + strand, within Psyr_1121at 1271.101 kb on + strand, within Psyr_1121at 1271.107 kb on + strand, within Psyr_1121at 1271.409 kb on + strandat 1272.185 kb on + strandat 1272.185 kb on + strandat 1272.185 kb on + strandat 1272.185 kb on + strandat 1272.186 kb on - strandat 1272.186 kb on - strandat 1272.186 kb on - strandat 1272.399 kb on - strand, within Psyr_1123at 1272.410 kb on - strand, within Psyr_1123

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
remove
1,269,767 + Psyr_1120 0.36 -2.1
1,269,767 + Psyr_1120 0.36 -3.3
1,269,850 + Psyr_1120 0.41 +1.1
1,269,850 + Psyr_1120 0.41 -2.2
1,269,850 + Psyr_1120 0.41 +1.1
1,269,850 + Psyr_1120 0.41 -1.6
1,269,850 + Psyr_1120 0.41 -3.0
1,269,850 + Psyr_1120 0.41 -3.2
1,269,850 + Psyr_1120 0.41 -0.8
1,269,861 + Psyr_1120 0.42 -0.7
1,269,861 + Psyr_1120 0.42 -1.3
1,269,861 + Psyr_1120 0.42 -3.5
1,269,861 + Psyr_1120 0.42 -2.2
1,269,861 + Psyr_1120 0.42 -2.4
1,269,908 + Psyr_1120 0.45 +0.6
1,270,097 + Psyr_1120 0.58 -3.8
1,270,235 + Psyr_1120 0.68 -0.8
1,270,235 + Psyr_1120 0.68 +1.3
1,270,235 + Psyr_1120 0.68 -1.7
1,270,235 + Psyr_1120 0.68 -1.7
1,270,235 + Psyr_1120 0.68 -1.8
1,270,307 + Psyr_1120 0.72 -1.8
1,270,307 + Psyr_1120 0.72 -1.5
1,270,307 + Psyr_1120 0.72 -2.7
1,270,307 + Psyr_1120 0.72 -1.3
1,270,307 + Psyr_1120 0.72 -1.7
1,270,469 + Psyr_1120 0.83 -0.0
1,270,470 - Psyr_1120 0.84 -2.7
1,270,496 + Psyr_1120 0.85 -0.1
1,270,496 + Psyr_1120 0.85 -2.4
1,270,496 + Psyr_1120 0.85 -0.2
1,270,497 - Psyr_1120 0.85 -0.5
1,270,565 + -0.8
1,270,697 + +1.5
1,271,031 + Psyr_1121 0.47 -1.8
1,271,101 + Psyr_1121 0.56 -1.3
1,271,101 + Psyr_1121 0.56 -2.8
1,271,107 + Psyr_1121 0.57 +0.5
1,271,409 + -2.4
1,272,185 + -3.3
1,272,185 + -0.3
1,272,185 + +0.5
1,272,185 + -2.3
1,272,186 - -3.0
1,272,186 - -1.1
1,272,186 - -1.3
1,272,399 - Psyr_1123 0.62 -2.0
1,272,410 - Psyr_1123 0.67 -0.8

Or see this region's nucleotide sequence