Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0677

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0676 and Psyr_0677 are separated by 186 nucleotidesPsyr_0677 and Psyr_0678 are separated by 111 nucleotides Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353 _0676 Psyr_0677: Psyr_0677 - transcriptional regulator, LysR family, at 767,540 to 768,460 _0677 Psyr_0678: Psyr_0678 - Aminotransferase class-III, at 768,572 to 769,918 _0678 Position (kb) 767 768 769Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 766.569 kb on + strand, within Psyr_0676at 766.569 kb on + strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.900 kb on + strand, within Psyr_0676at 767.143 kb on + strand, within Psyr_0676at 767.144 kb on - strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.316 kb on + strandat 767.316 kb on + strandat 767.317 kb on - strandat 767.407 kb on + strandat 767.408 kb on - strandat 767.408 kb on - strandat 767.443 kb on + strandat 767.443 kb on + strandat 767.457 kb on + strandat 767.458 kb on - strandat 767.469 kb on + strandat 767.469 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.533 kb on - strandat 767.533 kb on - strandat 767.533 kb on - strandat 767.533 kb on - strandat 767.691 kb on + strand, within Psyr_0677at 767.706 kb on + strand, within Psyr_0677at 767.706 kb on + strand, within Psyr_0677at 767.706 kb on + strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.715 kb on + strand, within Psyr_0677at 767.716 kb on - strand, within Psyr_0677at 767.788 kb on - strand, within Psyr_0677at 767.788 kb on - strand, within Psyr_0677at 767.881 kb on - strand, within Psyr_0677at 767.907 kb on + strand, within Psyr_0677at 767.907 kb on + strand, within Psyr_0677at 767.908 kb on - strand, within Psyr_0677at 767.928 kb on + strand, within Psyr_0677at 767.928 kb on + strand, within Psyr_0677at 767.928 kb on + strand, within Psyr_0677at 767.940 kb on + strand, within Psyr_0677at 767.940 kb on + strand, within Psyr_0677at 767.940 kb on + strand, within Psyr_0677at 768.002 kb on + strand, within Psyr_0677at 768.002 kb on + strand, within Psyr_0677at 768.002 kb on + strand, within Psyr_0677at 768.100 kb on + strand, within Psyr_0677at 768.225 kb on + strand, within Psyr_0677at 768.324 kb on - strand, within Psyr_0677at 768.395 kb on + strandat 768.396 kb on - strandat 768.489 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.577 kb on + strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.578 kb on - strandat 768.641 kb on + strandat 768.641 kb on + strandat 768.641 kb on + strandat 768.701 kb on + strandat 768.701 kb on + strandat 768.701 kb on + strandat 768.702 kb on - strandat 768.702 kb on - strandat 768.731 kb on + strand, within Psyr_0678at 768.731 kb on + strand, within Psyr_0678at 768.732 kb on - strand, within Psyr_0678at 768.732 kb on - strand, within Psyr_0678at 768.732 kb on - strand, within Psyr_0678at 768.732 kb on - strand, within Psyr_0678at 768.732 kb on - strand, within Psyr_0678at 768.750 kb on + strand, within Psyr_0678at 768.750 kb on + strand, within Psyr_0678at 768.824 kb on + strand, within Psyr_0678at 768.824 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.917 kb on + strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.918 kb on - strand, within Psyr_0678at 768.919 kb on + strand, within Psyr_0678at 768.919 kb on + strand, within Psyr_0678at 768.963 kb on + strand, within Psyr_0678at 769.292 kb on + strand, within Psyr_0678at 769.293 kb on - strand, within Psyr_0678at 769.293 kb on - strand, within Psyr_0678at 769.331 kb on - strand, within Psyr_0678

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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766,569 + Psyr_0676 0.44 +1.7
766,569 + Psyr_0676 0.44 -2.4
766,570 - Psyr_0676 0.44 +1.2
766,570 - Psyr_0676 0.44 -2.6
766,570 - Psyr_0676 0.44 +0.7
766,570 - Psyr_0676 0.44 -0.8
766,900 + Psyr_0676 0.68 -1.3
767,143 + Psyr_0676 0.85 +1.1
767,144 - Psyr_0676 0.85 -2.9
767,190 + Psyr_0676 0.88 +0.4
767,190 + Psyr_0676 0.88 +0.5
767,190 + Psyr_0676 0.88 +0.7
767,190 + Psyr_0676 0.88 +2.0
767,190 + Psyr_0676 0.88 -1.3
767,190 + Psyr_0676 0.88 +0.5
767,190 + Psyr_0676 0.88 +1.6
767,190 + Psyr_0676 0.88 -3.1
767,190 + Psyr_0676 0.88 -3.2
767,190 + Psyr_0676 0.88 -0.5
767,191 - Psyr_0676 0.88 +1.0
767,191 - Psyr_0676 0.88 -3.4
767,191 - Psyr_0676 0.88 -3.1
767,191 - Psyr_0676 0.88 -2.7
767,191 - Psyr_0676 0.88 +1.8
767,191 - Psyr_0676 0.88 -0.4
767,191 - Psyr_0676 0.88 +0.6
767,191 - Psyr_0676 0.88 +0.6
767,316 + +0.9
767,316 + -0.1
767,317 - -1.1
767,407 + +0.4
767,408 - -0.8
767,408 - +2.0
767,443 + -2.5
767,443 + +2.7
767,457 + +0.0
767,458 - -0.8
767,469 + -0.4
767,469 + +1.1
767,532 + +1.3
767,532 + -2.8
767,532 + +0.9
767,532 + -3.3
767,532 + +0.7
767,533 - -1.3
767,533 - -0.1
767,533 - +0.5
767,533 - +1.3
767,691 + Psyr_0677 0.16 -2.5
767,706 + Psyr_0677 0.18 -2.6
767,706 + Psyr_0677 0.18 -2.6
767,706 + Psyr_0677 0.18 -0.1
767,707 - Psyr_0677 0.18 -1.1
767,707 - Psyr_0677 0.18 -1.0
767,707 - Psyr_0677 0.18 -0.1
767,707 - Psyr_0677 0.18 +1.2
767,711 + Psyr_0677 0.19 +0.0
767,711 + Psyr_0677 0.19 -0.3
767,711 + Psyr_0677 0.19 -0.3
767,711 + Psyr_0677 0.19 +0.4
767,711 + Psyr_0677 0.19 +1.4
767,711 + Psyr_0677 0.19 +0.8
767,711 + Psyr_0677 0.19 -1.3
767,711 + Psyr_0677 0.19 -1.3
767,711 + Psyr_0677 0.19 +0.6
767,711 + Psyr_0677 0.19 +0.0
767,711 + Psyr_0677 0.19 +0.2
767,711 + Psyr_0677 0.19 +0.2
767,711 + Psyr_0677 0.19 -3.5
767,711 + Psyr_0677 0.19 -2.2
767,712 - Psyr_0677 0.19 +0.2
767,712 - Psyr_0677 0.19 -0.9
767,712 - Psyr_0677 0.19 -0.2
767,712 - Psyr_0677 0.19 +0.1
767,712 - Psyr_0677 0.19 +2.3
767,712 - Psyr_0677 0.19 +0.5
767,712 - Psyr_0677 0.19 +1.5
767,712 - Psyr_0677 0.19 +2.0
767,712 - Psyr_0677 0.19 +1.0
767,712 - Psyr_0677 0.19 -1.6
767,712 - Psyr_0677 0.19 -2.7
767,712 - Psyr_0677 0.19 +0.5
767,712 - Psyr_0677 0.19 -3.2
767,712 - Psyr_0677 0.19 -0.2
767,715 + Psyr_0677 0.19 -2.5
767,716 - Psyr_0677 0.19 +1.3
767,788 - Psyr_0677 0.27 +1.2
767,788 - Psyr_0677 0.27 -1.0
767,881 - Psyr_0677 0.37 +0.9
767,907 + Psyr_0677 0.40 -1.6
767,907 + Psyr_0677 0.40 +1.0
767,908 - Psyr_0677 0.40 -1.1
767,928 + Psyr_0677 0.42 -0.4
767,928 + Psyr_0677 0.42 +0.7
767,928 + Psyr_0677 0.42 +1.4
767,940 + Psyr_0677 0.43 -3.9
767,940 + Psyr_0677 0.43 -0.3
767,940 + Psyr_0677 0.43 -1.0
768,002 + Psyr_0677 0.50 -0.1
768,002 + Psyr_0677 0.50 +0.0
768,002 + Psyr_0677 0.50 +0.9
768,100 + Psyr_0677 0.61 -2.5
768,225 + Psyr_0677 0.74 +0.2
768,324 - Psyr_0677 0.85 -0.9
768,395 + -2.3
768,396 - +0.2
768,489 + -2.5
768,577 + +0.6
768,577 + -0.9
768,577 + +0.5
768,577 + -0.5
768,577 + -2.9
768,577 + +1.1
768,577 + -0.8
768,577 + -1.5
768,577 + +1.3
768,577 + +0.2
768,577 + -0.8
768,578 - +0.1
768,578 - +0.8
768,578 - +0.6
768,578 - +0.8
768,578 - +0.2
768,578 - -1.5
768,578 - +2.3
768,578 - -1.6
768,578 - +0.1
768,578 - +1.4
768,578 - +1.7
768,578 - -2.2
768,578 - +0.5
768,641 + -3.0
768,641 + +0.4
768,641 + -0.8
768,701 + +1.5
768,701 + -0.2
768,701 + -0.9
768,702 - -0.6
768,702 - +0.2
768,731 + Psyr_0678 0.12 -1.8
768,731 + Psyr_0678 0.12 -2.2
768,732 - Psyr_0678 0.12 +1.2
768,732 - Psyr_0678 0.12 +3.1
768,732 - Psyr_0678 0.12 -1.5
768,732 - Psyr_0678 0.12 +0.8
768,732 - Psyr_0678 0.12 -1.3
768,750 + Psyr_0678 0.13 +0.6
768,750 + Psyr_0678 0.13 -2.0
768,824 + Psyr_0678 0.19 -2.2
768,824 + Psyr_0678 0.19 +1.9
768,917 + Psyr_0678 0.26 -3.1
768,917 + Psyr_0678 0.26 -1.1
768,917 + Psyr_0678 0.26 +1.2
768,917 + Psyr_0678 0.26 -0.5
768,917 + Psyr_0678 0.26 -1.5
768,917 + Psyr_0678 0.26 +0.7
768,917 + Psyr_0678 0.26 -3.1
768,917 + Psyr_0678 0.26 +1.1
768,918 - Psyr_0678 0.26 -1.2
768,918 - Psyr_0678 0.26 +1.9
768,918 - Psyr_0678 0.26 +1.5
768,918 - Psyr_0678 0.26 +1.1
768,918 - Psyr_0678 0.26 +0.9
768,918 - Psyr_0678 0.26 -2.3
768,918 - Psyr_0678 0.26 -0.3
768,918 - Psyr_0678 0.26 +1.8
768,918 - Psyr_0678 0.26 -2.1
768,918 - Psyr_0678 0.26 -0.7
768,918 - Psyr_0678 0.26 -0.8
768,918 - Psyr_0678 0.26 -0.8
768,918 - Psyr_0678 0.26 +1.2
768,918 - Psyr_0678 0.26 -1.8
768,919 + Psyr_0678 0.26 +1.9
768,919 + Psyr_0678 0.26 +0.8
768,963 + Psyr_0678 0.29 +0.2
769,292 + Psyr_0678 0.53 -1.9
769,293 - Psyr_0678 0.54 -1.8
769,293 - Psyr_0678 0.54 -0.7
769,331 - Psyr_0678 0.56 -1.1

Or see this region's nucleotide sequence