Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0672 and Psyr_0673 are separated by 11 nucleotides Psyr_0673 and Psyr_0674 are separated by 532 nucleotides
Psyr_0672: Psyr_0672 - nucleoside ABC transporter membrane protein, at 761,375 to 762,475
_0672
Psyr_0673: Psyr_0673 - nucleoside ABC transporter ATP-binding protein, at 762,487 to 764,040
_0673
Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166
_0674
Position (kb) 762
763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 761.550 kb on + strand, within Psyr_0672 at 761.550 kb on + strand, within Psyr_0672 at 761.550 kb on + strand, within Psyr_0672 at 761.550 kb on + strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.631 kb on + strand, within Psyr_0672 at 761.631 kb on + strand, within Psyr_0672 at 761.800 kb on - strand, within Psyr_0672 at 761.868 kb on + strand, within Psyr_0672 at 761.868 kb on + strand, within Psyr_0672 at 761.868 kb on + strand, within Psyr_0672 at 761.869 kb on - strand, within Psyr_0672 at 761.869 kb on - strand, within Psyr_0672 at 761.869 kb on - strand, within Psyr_0672 at 761.988 kb on + strand, within Psyr_0672 at 761.989 kb on - strand, within Psyr_0672 at 761.989 kb on - strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.013 kb on - strand, within Psyr_0672 at 762.013 kb on - strand, within Psyr_0672 at 762.013 kb on - strand, within Psyr_0672 at 762.025 kb on + strand, within Psyr_0672 at 762.025 kb on + strand, within Psyr_0672 at 762.025 kb on + strand, within Psyr_0672 at 762.026 kb on - strand, within Psyr_0672 at 762.154 kb on + strand, within Psyr_0672 at 762.154 kb on + strand, within Psyr_0672 at 762.154 kb on + strand, within Psyr_0672 at 762.155 kb on - strand, within Psyr_0672 at 762.155 kb on - strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 763.192 kb on + strand, within Psyr_0673 at 763.192 kb on + strand, within Psyr_0673 at 763.192 kb on + strand, within Psyr_0673 at 763.193 kb on - strand, within Psyr_0673 at 763.295 kb on + strand, within Psyr_0673 at 763.450 kb on - strand, within Psyr_0673 at 763.450 kb on - strand, within Psyr_0673 at 763.647 kb on + strand, within Psyr_0673 at 763.652 kb on + strand, within Psyr_0673 at 763.874 kb on + strand, within Psyr_0673 at 763.874 kb on + strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.999 kb on - strand at 764.257 kb on - strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.333 kb on - strand at 764.361 kb on - strand at 764.376 kb on - strand at 764.391 kb on + strand at 764.392 kb on - strand at 764.401 kb on + strand at 764.512 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.550 kb on + strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.844 kb on + strand, within Psyr_0674 at 764.845 kb on - strand, within Psyr_0674 at 764.886 kb on + strand, within Psyr_0674
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 761,550 + Psyr_0672 0.16 -1.0 761,550 + Psyr_0672 0.16 -1.5 761,550 + Psyr_0672 0.16 +0.5 761,550 + Psyr_0672 0.16 -0.3 761,551 - Psyr_0672 0.16 +1.4 761,551 - Psyr_0672 0.16 +0.8 761,551 - Psyr_0672 0.16 -2.2 761,551 - Psyr_0672 0.16 +0.1 761,631 + Psyr_0672 0.23 +2.0 761,631 + Psyr_0672 0.23 -1.3 761,800 - Psyr_0672 0.39 +1.9 761,868 + Psyr_0672 0.45 -0.2 761,868 + Psyr_0672 0.45 -0.4 761,868 + Psyr_0672 0.45 +0.8 761,869 - Psyr_0672 0.45 -0.1 761,869 - Psyr_0672 0.45 -0.4 761,869 - Psyr_0672 0.45 -0.0 761,988 + Psyr_0672 0.56 +1.1 761,989 - Psyr_0672 0.56 +2.9 761,989 - Psyr_0672 0.56 +0.1 762,012 + Psyr_0672 0.58 +0.5 762,012 + Psyr_0672 0.58 -2.6 762,012 + Psyr_0672 0.58 -2.7 762,012 + Psyr_0672 0.58 +1.5 762,012 + Psyr_0672 0.58 -0.1 762,013 - Psyr_0672 0.58 +0.1 762,013 - Psyr_0672 0.58 +1.5 762,013 - Psyr_0672 0.58 -1.5 762,025 + Psyr_0672 0.59 +1.7 762,025 + Psyr_0672 0.59 -2.3 762,025 + Psyr_0672 0.59 -1.5 762,026 - Psyr_0672 0.59 -0.3 762,154 + Psyr_0672 0.71 +1.4 762,154 + Psyr_0672 0.71 -0.4 762,154 + Psyr_0672 0.71 +0.5 762,155 - Psyr_0672 0.71 -0.2 762,155 - Psyr_0672 0.71 -0.1 762,212 + Psyr_0672 0.76 +1.2 762,212 + Psyr_0672 0.76 -1.1 762,212 + Psyr_0672 0.76 -0.7 762,212 + Psyr_0672 0.76 +0.2 762,212 + Psyr_0672 0.76 +0.4 762,212 + Psyr_0672 0.76 +2.8 762,212 + Psyr_0672 0.76 +1.0 762,212 + Psyr_0672 0.76 -3.5 762,212 + Psyr_0672 0.76 +0.0 762,212 + Psyr_0672 0.76 -2.8 762,212 + Psyr_0672 0.76 +0.3 762,212 + Psyr_0672 0.76 +0.7 762,212 + Psyr_0672 0.76 -1.1 762,212 + Psyr_0672 0.76 +1.7 762,212 + Psyr_0672 0.76 -2.6 762,212 + Psyr_0672 0.76 -0.0 762,212 + Psyr_0672 0.76 +2.7 762,212 + Psyr_0672 0.76 +1.5 762,212 + Psyr_0672 0.76 +0.7 762,213 - Psyr_0672 0.76 +1.1 762,213 - Psyr_0672 0.76 -0.2 762,213 - Psyr_0672 0.76 -0.4 762,213 - Psyr_0672 0.76 +1.1 762,213 - Psyr_0672 0.76 -0.2 762,213 - Psyr_0672 0.76 +0.9 762,213 - Psyr_0672 0.76 -0.2 762,213 - Psyr_0672 0.76 +0.8 762,213 - Psyr_0672 0.76 -2.6 762,213 - Psyr_0672 0.76 -2.4 762,213 - Psyr_0672 0.76 +1.5 762,213 - Psyr_0672 0.76 +2.2 762,213 - Psyr_0672 0.76 -2.2 762,213 - Psyr_0672 0.76 -1.6 762,213 - Psyr_0672 0.76 -0.1 763,192 + Psyr_0673 0.45 -0.1 763,192 + Psyr_0673 0.45 -0.8 763,192 + Psyr_0673 0.45 +0.5 763,193 - Psyr_0673 0.45 +0.5 763,295 + Psyr_0673 0.52 -1.9 763,450 - Psyr_0673 0.62 -0.8 763,450 - Psyr_0673 0.62 +0.5 763,647 + Psyr_0673 0.75 -1.4 763,652 + Psyr_0673 0.75 -1.2 763,874 + Psyr_0673 0.89 +0.2 763,874 + Psyr_0673 0.89 -1.0 763,875 - Psyr_0673 0.89 +0.4 763,875 - Psyr_0673 0.89 -1.1 763,875 - Psyr_0673 0.89 +2.5 763,875 - Psyr_0673 0.89 +0.1 763,875 - Psyr_0673 0.89 +0.3 763,999 - -0.3 764,257 - -1.9 764,332 + -0.1 764,332 + +0.9 764,332 + -1.7 764,332 + -0.0 764,332 + -0.2 764,333 - -0.9 764,361 - -0.3 764,376 - +0.1 764,391 + +1.6 764,392 - -1.2 764,401 + -0.2 764,512 + +0.1 764,533 + -0.1 764,533 + -2.5 764,533 + -0.4 764,533 + -1.1 764,534 - -2.1 764,534 - +2.8 764,534 - +0.1 764,534 - +1.0 764,534 - -0.5 764,534 - -0.8 764,550 + -1.3 764,551 - -0.1 764,551 - +0.9 764,551 - +1.2 764,551 - +1.5 764,551 - +2.5 764,551 - -2.9 764,844 + Psyr_0674 0.46 +1.2 764,845 - Psyr_0674 0.46 +1.5 764,886 + Psyr_0674 0.53 +1.9
Or see this region's nucleotide sequence