Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0565 and Psyr_0566 are separated by 736 nucleotides Psyr_0566 and Psyr_0567 are separated by 63 nucleotides
Psyr_0565: Psyr_0565 - Protein of unknown function UPF0126, at 641,729 to 642,340
_0565
Psyr_0566: Psyr_0566 - 4Fe-4S cluster binding protein, at 643,077 to 644,165
_0566
Psyr_0567: Psyr_0567 - Protein of unknown function UPF0031:YjeF-related protein, N-terminal, at 644,229 to 645,719
_0567
Position (kb) 643
644
645 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 642.170 kb on + strand, within Psyr_0565 at 642.171 kb on - strand, within Psyr_0565 at 642.210 kb on + strand, within Psyr_0565 at 642.211 kb on - strand, within Psyr_0565 at 642.218 kb on + strand, within Psyr_0565 at 642.219 kb on - strand, within Psyr_0565 at 642.323 kb on + strand at 642.324 kb on - strand at 642.324 kb on - strand at 642.324 kb on - strand at 642.325 kb on + strand at 642.326 kb on - strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.377 kb on - strand at 642.377 kb on - strand at 642.377 kb on - strand at 642.408 kb on - strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.727 kb on + strand at 642.841 kb on + strand at 642.841 kb on + strand at 642.841 kb on + strand at 642.841 kb on + strand at 642.841 kb on + strand at 642.841 kb on + strand at 642.841 kb on + strand at 642.843 kb on + strand at 642.843 kb on + strand at 642.845 kb on + strand at 642.845 kb on + strand at 642.845 kb on + strand at 642.905 kb on - strand at 642.905 kb on - strand at 642.905 kb on - strand at 642.905 kb on - strand at 642.905 kb on - strand at 643.018 kb on + strand at 643.018 kb on + strand at 643.018 kb on + strand at 643.018 kb on + strand at 643.018 kb on + strand at 643.018 kb on + strand at 643.020 kb on + strand at 643.020 kb on + strand at 643.020 kb on + strand at 643.020 kb on + strand at 643.020 kb on + strand at 643.022 kb on + strand at 643.022 kb on + strand at 643.022 kb on + strand at 643.022 kb on + strand at 643.022 kb on + strand at 643.022 kb on + strand at 643.022 kb on + strand at 643.061 kb on + strand at 643.072 kb on + strand at 643.078 kb on + strand at 643.078 kb on + strand at 643.235 kb on - strand, within Psyr_0566 at 643.484 kb on + strand, within Psyr_0566 at 643.484 kb on + strand, within Psyr_0566 at 643.484 kb on + strand, within Psyr_0566 at 643.484 kb on + strand, within Psyr_0566 at 643.484 kb on + strand, within Psyr_0566 at 643.485 kb on - strand, within Psyr_0566 at 643.485 kb on - strand, within Psyr_0566 at 643.507 kb on + strand, within Psyr_0566 at 643.508 kb on - strand, within Psyr_0566 at 643.553 kb on + strand, within Psyr_0566 at 643.554 kb on - strand, within Psyr_0566 at 643.554 kb on - strand, within Psyr_0566 at 643.772 kb on + strand, within Psyr_0566 at 643.772 kb on + strand, within Psyr_0566 at 643.773 kb on - strand, within Psyr_0566 at 643.816 kb on + strand, within Psyr_0566 at 643.817 kb on - strand, within Psyr_0566 at 643.846 kb on + strand, within Psyr_0566 at 643.846 kb on + strand, within Psyr_0566 at 643.847 kb on - strand, within Psyr_0566 at 643.847 kb on - strand, within Psyr_0566 at 643.847 kb on - strand, within Psyr_0566 at 643.847 kb on - strand, within Psyr_0566 at 643.900 kb on + strand, within Psyr_0566 at 643.900 kb on + strand, within Psyr_0566 at 643.900 kb on + strand, within Psyr_0566 at 643.901 kb on - strand, within Psyr_0566 at 643.901 kb on - strand, within Psyr_0566 at 643.901 kb on - strand, within Psyr_0566 at 643.901 kb on - strand, within Psyr_0566 at 643.982 kb on + strand, within Psyr_0566 at 643.983 kb on - strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.984 kb on + strand, within Psyr_0566 at 643.985 kb on - strand, within Psyr_0566 at 643.985 kb on - strand, within Psyr_0566 at 643.985 kb on - strand, within Psyr_0566 at 643.985 kb on - strand, within Psyr_0566 at 643.985 kb on - strand, within Psyr_0566 at 643.985 kb on - strand, within Psyr_0566 at 644.002 kb on + strand, within Psyr_0566 at 644.002 kb on + strand, within Psyr_0566 at 644.145 kb on + strand at 644.145 kb on + strand at 644.145 kb on + strand at 644.145 kb on + strand at 644.145 kb on + strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.146 kb on - strand at 644.153 kb on + strand at 644.153 kb on + strand at 644.154 kb on - strand at 644.154 kb on - strand at 644.195 kb on + strand at 644.195 kb on + strand at 644.195 kb on + strand at 644.196 kb on - strand at 644.196 kb on - strand at 644.196 kb on - strand at 644.197 kb on + strand at 644.197 kb on + strand at 644.197 kb on + strand at 644.197 kb on + strand at 644.197 kb on + strand at 644.197 kb on + strand at 644.198 kb on - strand at 644.198 kb on - strand at 644.222 kb on + strand at 644.240 kb on + strand at 644.241 kb on - strand at 644.252 kb on - strand at 644.265 kb on + strand at 644.265 kb on + strand at 644.368 kb on + strand at 644.368 kb on + strand at 644.559 kb on - strand, within Psyr_0567 at 644.646 kb on + strand, within Psyr_0567 at 644.646 kb on + strand, within Psyr_0567 at 644.646 kb on + strand, within Psyr_0567 at 644.647 kb on - strand, within Psyr_0567 at 644.647 kb on - strand, within Psyr_0567 at 644.647 kb on - strand, within Psyr_0567 at 644.647 kb on - strand, within Psyr_0567 at 644.771 kb on + strand, within Psyr_0567
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 642,170 + Psyr_0565 0.72 -0.6 642,171 - Psyr_0565 0.72 -0.4 642,210 + Psyr_0565 0.79 -0.7 642,211 - Psyr_0565 0.79 -0.7 642,218 + Psyr_0565 0.80 -2.9 642,219 - Psyr_0565 0.80 -3.9 642,323 + -0.1 642,324 - -2.9 642,324 - -2.2 642,324 - -1.0 642,325 + +0.6 642,326 - -0.2 642,376 + -0.8 642,376 + +0.9 642,376 + +1.4 642,376 + +0.7 642,376 + +1.5 642,377 - +0.3 642,377 - +2.3 642,377 - -0.1 642,408 - -1.2 642,415 + -0.0 642,415 + -0.3 642,415 + -0.4 642,415 + +3.6 642,415 + -1.6 642,415 + +1.3 642,415 + +2.5 642,415 + +0.5 642,415 + -1.5 642,415 + -1.6 642,415 + -1.9 642,415 + -2.4 642,416 - +0.8 642,416 - -0.3 642,416 - +1.6 642,416 - +0.6 642,416 - -1.8 642,416 - -1.1 642,416 - +0.3 642,416 - -3.5 642,416 - +0.8 642,470 + +0.3 642,470 + +0.7 642,470 + +0.6 642,470 + +1.1 642,470 + +1.4 642,470 + -2.7 642,470 + +0.2 642,470 + +1.0 642,470 + +1.0 642,471 - -0.1 642,471 - -1.4 642,471 - +1.6 642,471 - -1.7 642,471 - +0.2 642,471 - +2.4 642,727 + -0.8 642,727 + -3.4 642,727 + +2.0 642,727 + -0.7 642,727 + -0.0 642,727 + +2.7 642,727 + -2.0 642,727 + -2.9 642,727 + -2.9 642,727 + +0.9 642,727 + -2.3 642,727 + -0.5 642,727 + -0.1 642,727 + +2.3 642,841 + -2.2 642,841 + +0.9 642,841 + -0.6 642,841 + -2.5 642,841 + -0.0 642,841 + +0.8 642,841 + +0.7 642,843 + +2.2 642,843 + +0.1 642,845 + +2.0 642,845 + +1.8 642,845 + -2.5 642,905 - +0.7 642,905 - -0.7 642,905 - -0.4 642,905 - -1.2 642,905 - -1.9 643,018 + -1.5 643,018 + -2.0 643,018 + +0.4 643,018 + -0.4 643,018 + +1.0 643,018 + -0.8 643,020 + -0.8 643,020 + -0.4 643,020 + +1.1 643,020 + -0.0 643,020 + -0.6 643,022 + -0.2 643,022 + +3.0 643,022 + +4.3 643,022 + +0.3 643,022 + -0.8 643,022 + +1.0 643,022 + -2.1 643,061 + +0.4 643,072 + +0.7 643,078 + -0.3 643,078 + +1.3 643,235 - Psyr_0566 0.15 +0.8 643,484 + Psyr_0566 0.37 -1.8 643,484 + Psyr_0566 0.37 -0.0 643,484 + Psyr_0566 0.37 -1.8 643,484 + Psyr_0566 0.37 -1.1 643,484 + Psyr_0566 0.37 +1.1 643,485 - Psyr_0566 0.37 +0.2 643,485 - Psyr_0566 0.37 -2.7 643,507 + Psyr_0566 0.39 -3.1 643,508 - Psyr_0566 0.40 +5.8 643,553 + Psyr_0566 0.44 -1.6 643,554 - Psyr_0566 0.44 -1.4 643,554 - Psyr_0566 0.44 +0.9 643,772 + Psyr_0566 0.64 +1.1 643,772 + Psyr_0566 0.64 +0.4 643,773 - Psyr_0566 0.64 -0.2 643,816 + Psyr_0566 0.68 -0.4 643,817 - Psyr_0566 0.68 +0.9 643,846 + Psyr_0566 0.71 -1.8 643,846 + Psyr_0566 0.71 -1.6 643,847 - Psyr_0566 0.71 -2.8 643,847 - Psyr_0566 0.71 -2.2 643,847 - Psyr_0566 0.71 -1.8 643,847 - Psyr_0566 0.71 -3.0 643,900 + Psyr_0566 0.76 -1.0 643,900 + Psyr_0566 0.76 -0.5 643,900 + Psyr_0566 0.76 -0.0 643,901 - Psyr_0566 0.76 -0.0 643,901 - Psyr_0566 0.76 -0.3 643,901 - Psyr_0566 0.76 -3.2 643,901 - Psyr_0566 0.76 -1.0 643,982 + Psyr_0566 0.83 -0.5 643,983 - Psyr_0566 0.83 -2.1 643,984 + Psyr_0566 0.83 -3.0 643,984 + Psyr_0566 0.83 +0.1 643,984 + Psyr_0566 0.83 -3.5 643,984 + Psyr_0566 0.83 +0.6 643,984 + Psyr_0566 0.83 -0.2 643,984 + Psyr_0566 0.83 -2.8 643,984 + Psyr_0566 0.83 -0.0 643,984 + Psyr_0566 0.83 -1.6 643,984 + Psyr_0566 0.83 +0.2 643,984 + Psyr_0566 0.83 -0.4 643,984 + Psyr_0566 0.83 -3.3 643,984 + Psyr_0566 0.83 -0.0 643,984 + Psyr_0566 0.83 -2.2 643,985 - Psyr_0566 0.83 +1.3 643,985 - Psyr_0566 0.83 +0.3 643,985 - Psyr_0566 0.83 +0.1 643,985 - Psyr_0566 0.83 +1.3 643,985 - Psyr_0566 0.83 -1.4 643,985 - Psyr_0566 0.83 -2.6 644,002 + Psyr_0566 0.85 +1.0 644,002 + Psyr_0566 0.85 +1.6 644,145 + -3.0 644,145 + +0.4 644,145 + +0.1 644,145 + -1.0 644,145 + -2.9 644,146 - -1.9 644,146 - -0.4 644,146 - -0.0 644,146 - -1.6 644,146 - +0.6 644,146 - +1.1 644,153 + -1.3 644,153 + -0.5 644,154 - -3.9 644,154 - +0.4 644,195 + -2.2 644,195 + -0.2 644,195 + -0.2 644,196 - +0.8 644,196 - -1.4 644,196 - +0.3 644,197 + -1.4 644,197 + +1.0 644,197 + -0.8 644,197 + +0.1 644,197 + +2.0 644,197 + +1.6 644,198 - -3.1 644,198 - -0.4 644,222 + -1.0 644,240 + -1.1 644,241 - -1.0 644,252 - -0.4 644,265 + +0.7 644,265 + -0.9 644,368 + +2.1 644,368 + -1.2 644,559 - Psyr_0567 0.22 -2.1 644,646 + Psyr_0567 0.28 -0.4 644,646 + Psyr_0567 0.28 +0.8 644,646 + Psyr_0567 0.28 +0.8 644,647 - Psyr_0567 0.28 -1.9 644,647 - Psyr_0567 0.28 -3.1 644,647 - Psyr_0567 0.28 +0.6 644,647 - Psyr_0567 0.28 -1.9 644,771 + Psyr_0567 0.36 -0.1
Or see this region's nucleotide sequence