Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0547

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0545 and Psyr_0546 overlap by 32 nucleotidesPsyr_0546 and Psyr_0547 are separated by 177 nucleotidesPsyr_0547 and Psyr_0548 overlap by 10 nucleotidesPsyr_0548 and Psyr_0549 are separated by 145 nucleotides Psyr_0545: Psyr_0545 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 617,494 to 618,783 _0545 Psyr_0546: Psyr_0546 - lipoprotein, putative, at 618,752 to 619,498 _0546 Psyr_0547: Psyr_0547 - Conserved hypothetical protein 52, at 619,676 to 620,323 _0547 Psyr_0548: Psyr_0548 - Protein of unknown function DUF1249, at 620,314 to 620,766 _0548 Psyr_0549: Psyr_0549 - Metallophosphoesterase, at 620,912 to 621,718 _0549 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 618.804 kb on + strandat 618.862 kb on - strand, within Psyr_0546at 618.882 kb on + strand, within Psyr_0546at 618.883 kb on - strand, within Psyr_0546at 618.883 kb on - strand, within Psyr_0546at 619.065 kb on + strand, within Psyr_0546at 619.065 kb on + strand, within Psyr_0546at 619.066 kb on - strand, within Psyr_0546at 619.066 kb on - strand, within Psyr_0546at 619.066 kb on - strand, within Psyr_0546at 619.066 kb on - strand, within Psyr_0546at 619.137 kb on - strand, within Psyr_0546at 619.142 kb on - strand, within Psyr_0546at 619.160 kb on + strand, within Psyr_0546at 619.176 kb on + strand, within Psyr_0546at 619.177 kb on - strand, within Psyr_0546at 619.177 kb on - strand, within Psyr_0546at 619.177 kb on - strand, within Psyr_0546at 619.221 kb on + strand, within Psyr_0546at 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.537 kb on + strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.538 kb on - strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.561 kb on + strandat 619.562 kb on - strandat 619.562 kb on - strandat 619.594 kb on - strandat 619.620 kb on - strandat 619.620 kb on - strandat 619.664 kb on + strandat 619.750 kb on - strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.778 kb on + strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.779 kb on - strand, within Psyr_0547at 619.780 kb on + strand, within Psyr_0547at 619.780 kb on + strand, within Psyr_0547at 619.780 kb on + strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.781 kb on - strand, within Psyr_0547at 619.886 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.081 kb on + strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.082 kb on - strand, within Psyr_0547at 620.313 kb on + strandat 620.314 kb on - strandat 620.314 kb on - strandat 620.327 kb on + strandat 620.328 kb on - strandat 620.328 kb on - strandat 620.328 kb on - strandat 620.387 kb on - strand, within Psyr_0548at 620.478 kb on - strand, within Psyr_0548at 620.510 kb on - strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.584 kb on + strand, within Psyr_0548at 620.585 kb on - strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.647 kb on + strand, within Psyr_0548at 620.648 kb on - strand, within Psyr_0548at 620.648 kb on - strand, within Psyr_0548at 620.648 kb on - strand, within Psyr_0548at 621.117 kb on - strand, within Psyr_0549

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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618,804 + +0.3
618,862 - Psyr_0546 0.15 -0.8
618,882 + Psyr_0546 0.17 -2.0
618,883 - Psyr_0546 0.18 +1.0
618,883 - Psyr_0546 0.18 +1.1
619,065 + Psyr_0546 0.42 -0.6
619,065 + Psyr_0546 0.42 -1.9
619,066 - Psyr_0546 0.42 -3.0
619,066 - Psyr_0546 0.42 -3.1
619,066 - Psyr_0546 0.42 -0.4
619,066 - Psyr_0546 0.42 +3.0
619,137 - Psyr_0546 0.52 -0.7
619,142 - Psyr_0546 0.52 -0.4
619,160 + Psyr_0546 0.55 -1.0
619,176 + Psyr_0546 0.57 +1.4
619,177 - Psyr_0546 0.57 +2.0
619,177 - Psyr_0546 0.57 -1.6
619,177 - Psyr_0546 0.57 +0.9
619,221 + Psyr_0546 0.63 -0.7
619,537 + -1.6
619,537 + +1.6
619,537 + -0.9
619,537 + -2.7
619,537 + +0.5
619,537 + -1.0
619,537 + +1.2
619,537 + -2.7
619,537 + +1.3
619,537 + -2.7
619,537 + -3.4
619,537 + +2.1
619,538 - +1.2
619,538 - +0.4
619,538 - +1.5
619,538 - -2.6
619,538 - -0.2
619,538 - -0.2
619,541 + +0.0
619,541 + -1.0
619,541 + +1.8
619,541 + +0.0
619,541 + +0.2
619,541 + +0.5
619,541 + -0.0
619,542 - +0.8
619,542 - -1.0
619,542 - -0.8
619,542 - -0.4
619,542 - +0.2
619,542 - +1.1
619,542 - +0.0
619,542 - -1.0
619,542 - -1.0
619,561 + -1.4
619,562 - -3.0
619,562 - -1.0
619,594 - -0.3
619,620 - -1.7
619,620 - +1.7
619,664 + +1.0
619,750 - Psyr_0547 0.11 +0.5
619,778 + Psyr_0547 0.16 -1.2
619,778 + Psyr_0547 0.16 +1.6
619,778 + Psyr_0547 0.16 -0.1
619,778 + Psyr_0547 0.16 -1.2
619,778 + Psyr_0547 0.16 -2.7
619,778 + Psyr_0547 0.16 +0.6
619,778 + Psyr_0547 0.16 -0.5
619,778 + Psyr_0547 0.16 +0.3
619,778 + Psyr_0547 0.16 -1.7
619,778 + Psyr_0547 0.16 +0.8
619,778 + Psyr_0547 0.16 +1.7
619,779 - Psyr_0547 0.16 +0.1
619,779 - Psyr_0547 0.16 -1.9
619,779 - Psyr_0547 0.16 +1.3
619,779 - Psyr_0547 0.16 -1.2
619,779 - Psyr_0547 0.16 +1.0
619,779 - Psyr_0547 0.16 -2.0
619,779 - Psyr_0547 0.16 -1.0
619,780 + Psyr_0547 0.16 -0.7
619,780 + Psyr_0547 0.16 -1.6
619,780 + Psyr_0547 0.16 -2.3
619,781 - Psyr_0547 0.16 -3.1
619,781 - Psyr_0547 0.16 -2.4
619,781 - Psyr_0547 0.16 -1.7
619,781 - Psyr_0547 0.16 +1.4
619,781 - Psyr_0547 0.16 -2.7
619,886 + Psyr_0547 0.32 -0.9
620,081 + Psyr_0547 0.62 -0.8
620,081 + Psyr_0547 0.62 +1.6
620,081 + Psyr_0547 0.62 -1.9
620,081 + Psyr_0547 0.62 +0.0
620,081 + Psyr_0547 0.62 +0.0
620,081 + Psyr_0547 0.62 -0.8
620,081 + Psyr_0547 0.62 -0.2
620,082 - Psyr_0547 0.63 -1.9
620,082 - Psyr_0547 0.63 -0.7
620,082 - Psyr_0547 0.63 +1.0
620,082 - Psyr_0547 0.63 -0.2
620,082 - Psyr_0547 0.63 -3.1
620,082 - Psyr_0547 0.63 +1.1
620,082 - Psyr_0547 0.63 -0.4
620,082 - Psyr_0547 0.63 +2.3
620,082 - Psyr_0547 0.63 +0.3
620,313 + -2.5
620,314 - +0.3
620,314 - +1.2
620,327 + -0.1
620,328 - +2.0
620,328 - -0.5
620,328 - +0.1
620,387 - Psyr_0548 0.16 -2.4
620,478 - Psyr_0548 0.36 -0.6
620,510 - Psyr_0548 0.43 -3.3
620,584 + Psyr_0548 0.60 -2.1
620,584 + Psyr_0548 0.60 +0.7
620,584 + Psyr_0548 0.60 -3.3
620,584 + Psyr_0548 0.60 -2.5
620,584 + Psyr_0548 0.60 +1.4
620,584 + Psyr_0548 0.60 +0.9
620,585 - Psyr_0548 0.60 -0.8
620,647 + Psyr_0548 0.74 +1.6
620,647 + Psyr_0548 0.74 -1.4
620,647 + Psyr_0548 0.74 -0.4
620,647 + Psyr_0548 0.74 -3.3
620,648 - Psyr_0548 0.74 -1.3
620,648 - Psyr_0548 0.74 +1.0
620,648 - Psyr_0548 0.74 -2.2
621,117 - Psyr_0549 0.25 +2.1

Or see this region's nucleotide sequence