Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0372 and Psyr_0373 overlap by 1 nucleotides Psyr_0373 and Psyr_0374 are separated by 433 nucleotides Psyr_0374 and Psyr_0375 are separated by 280 nucleotides
Psyr_0372: Psyr_0372 - CDS, at 396,478 to 396,747
_0372
Psyr_0373: Psyr_0373 - CDS, at 396,747 to 397,178
_0373
Psyr_0374: Psyr_0374 - Phosphorylase, at 397,612 to 400,062
_0374
Psyr_0375: Psyr_0375 - prolyl aminopeptidase, Serine peptidase, MEROPS family S33, at 400,343 to 401,314
_0375
Position (kb) 397
398
399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 397.123 kb on + strand, within Psyr_0373 at 397.123 kb on + strand, within Psyr_0373 at 397.124 kb on - strand, within Psyr_0373 at 397.140 kb on + strand at 397.140 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.222 kb on + strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.223 kb on - strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.224 kb on + strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.225 kb on - strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.226 kb on + strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.227 kb on - strand at 397.249 kb on + strand at 397.257 kb on + strand at 397.258 kb on - strand at 397.258 kb on - strand at 397.335 kb on - strand at 397.488 kb on + strand at 397.489 kb on - strand at 397.590 kb on + strand at 397.591 kb on - strand at 397.799 kb on + strand at 397.800 kb on - strand at 397.800 kb on - strand at 398.034 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.162 kb on + strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.163 kb on - strand, within Psyr_0374 at 398.267 kb on + strand, within Psyr_0374 at 398.267 kb on + strand, within Psyr_0374 at 398.345 kb on + strand, within Psyr_0374 at 398.387 kb on + strand, within Psyr_0374 at 398.897 kb on + strand, within Psyr_0374 at 398.897 kb on + strand, within Psyr_0374 at 398.897 kb on + strand, within Psyr_0374 at 398.897 kb on + strand, within Psyr_0374 at 398.897 kb on + strand, within Psyr_0374 at 398.897 kb on + strand, within Psyr_0374 at 398.898 kb on - strand, within Psyr_0374 at 398.898 kb on - strand, within Psyr_0374 at 398.987 kb on + strand, within Psyr_0374 at 398.987 kb on + strand, within Psyr_0374 at 398.988 kb on - strand, within Psyr_0374 at 398.988 kb on - strand, within Psyr_0374 at 399.195 kb on - strand, within Psyr_0374 at 399.261 kb on + strand, within Psyr_0374 at 399.262 kb on - strand, within Psyr_0374 at 399.338 kb on - strand, within Psyr_0374 at 399.338 kb on - strand, within Psyr_0374 at 399.379 kb on - strand, within Psyr_0374 at 399.407 kb on + strand, within Psyr_0374 at 399.407 kb on + strand, within Psyr_0374 at 399.442 kb on + strand, within Psyr_0374 at 399.442 kb on + strand, within Psyr_0374 at 399.443 kb on - strand, within Psyr_0374 at 399.443 kb on - strand, within Psyr_0374 at 399.506 kb on + strand, within Psyr_0374 at 399.506 kb on + strand, within Psyr_0374 at 399.506 kb on + strand, within Psyr_0374 at 399.507 kb on - strand, within Psyr_0374 at 399.507 kb on - strand, within Psyr_0374 at 399.812 kb on + strand, within Psyr_0374 at 399.813 kb on - strand, within Psyr_0374 at 399.813 kb on - strand, within Psyr_0374 at 399.848 kb on + strand at 399.848 kb on + strand at 399.849 kb on - strand at 399.849 kb on - strand at 399.849 kb on - strand at 399.852 kb on - strand at 399.875 kb on + strand at 399.876 kb on - strand at 399.876 kb on - strand at 399.888 kb on + strand at 399.888 kb on + strand at 399.889 kb on - strand at 399.912 kb on + strand at 399.990 kb on - strand at 399.990 kb on - strand at 399.990 kb on - strand at 400.078 kb on + strand at 400.106 kb on + strand at 400.106 kb on + strand at 400.107 kb on - strand at 400.107 kb on - strand at 400.114 kb on - strand at 400.114 kb on - strand at 400.114 kb on - strand at 400.130 kb on - strand at 400.130 kb on - strand at 400.130 kb on - strand at 400.152 kb on - strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.163 kb on + strand at 400.164 kb on - strand at 400.164 kb on - strand at 400.164 kb on - strand at 400.164 kb on - strand at 400.287 kb on + strand at 400.287 kb on + strand at 400.287 kb on + strand at 400.287 kb on + strand at 400.287 kb on + strand at 400.288 kb on - strand at 400.307 kb on + strand at 400.307 kb on + strand at 400.307 kb on + strand at 400.307 kb on + strand at 400.308 kb on - strand at 400.310 kb on + strand at 400.310 kb on + strand at 400.310 kb on + strand at 400.310 kb on + strand at 400.310 kb on + strand at 400.310 kb on + strand at 400.310 kb on + strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.311 kb on - strand at 400.331 kb on + strand at 400.331 kb on + strand at 400.331 kb on + strand at 400.331 kb on + strand at 400.331 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.343 kb on - strand at 400.415 kb on + strand at 400.415 kb on + strand at 400.416 kb on - strand at 400.416 kb on - strand at 400.460 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.781 kb on + strand, within Psyr_0375 at 400.781 kb on + strand, within Psyr_0375 at 400.814 kb on + strand, within Psyr_0375 at 400.814 kb on + strand, within Psyr_0375 at 400.814 kb on + strand, within Psyr_0375 at 400.815 kb on - strand, within Psyr_0375 at 400.815 kb on - strand, within Psyr_0375 at 400.815 kb on - strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.827 kb on - strand, within Psyr_0375 at 400.827 kb on - strand, within Psyr_0375 at 400.827 kb on - strand, within Psyr_0375 at 401.040 kb on - strand, within Psyr_0375 at 401.040 kb on - strand, within Psyr_0375 at 401.040 kb on - strand, within Psyr_0375
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 397,123 + Psyr_0373 0.87 -2.1 397,123 + Psyr_0373 0.87 -0.0 397,124 - Psyr_0373 0.87 +2.0 397,140 + -2.2 397,140 + +0.6 397,222 + +2.2 397,222 + +1.0 397,222 + +0.9 397,222 + +0.6 397,222 + -0.2 397,222 + +2.0 397,222 + -2.2 397,222 + +3.1 397,222 + -0.2 397,222 + +2.0 397,222 + +0.4 397,222 + -1.5 397,222 + -3.1 397,222 + +1.1 397,222 + +0.2 397,222 + +0.2 397,223 - -0.7 397,223 - -2.3 397,223 - +3.3 397,223 - -3.2 397,223 - -0.9 397,223 - +0.3 397,223 - -2.3 397,223 - +1.2 397,223 - -0.1 397,223 - +1.0 397,223 - +0.7 397,223 - -1.0 397,223 - -0.5 397,223 - -1.4 397,223 - -0.3 397,224 + -3.5 397,224 + +0.3 397,224 + +0.9 397,224 + +2.0 397,224 + +1.3 397,225 - +1.6 397,225 - -2.2 397,225 - +0.0 397,225 - +1.3 397,225 - -1.2 397,225 - -0.7 397,225 - +0.4 397,225 - -0.0 397,225 - +0.1 397,225 - -3.4 397,225 - -1.8 397,225 - -1.1 397,225 - +1.0 397,225 - -3.0 397,225 - +0.1 397,226 + -1.8 397,226 + +1.9 397,226 + -0.7 397,226 + +0.1 397,226 + -1.1 397,226 + -0.5 397,227 - -3.0 397,227 - +0.3 397,227 - +2.9 397,227 - -0.7 397,227 - +0.2 397,227 - -0.6 397,249 + -2.9 397,257 + +0.3 397,258 - +1.0 397,258 - -2.9 397,335 - +0.0 397,488 + +0.6 397,489 - +1.3 397,590 + -0.5 397,591 - -0.2 397,799 + -1.1 397,800 - -1.3 397,800 - +2.0 398,034 + Psyr_0374 0.17 +2.5 398,162 + Psyr_0374 0.22 +0.4 398,162 + Psyr_0374 0.22 +0.1 398,162 + Psyr_0374 0.22 +1.6 398,162 + Psyr_0374 0.22 +3.7 398,162 + Psyr_0374 0.22 -1.3 398,162 + Psyr_0374 0.22 +1.0 398,162 + Psyr_0374 0.22 -1.5 398,162 + Psyr_0374 0.22 +0.7 398,163 - Psyr_0374 0.22 -1.3 398,163 - Psyr_0374 0.22 +1.5 398,163 - Psyr_0374 0.22 -0.9 398,163 - Psyr_0374 0.22 +0.7 398,163 - Psyr_0374 0.22 -2.2 398,163 - Psyr_0374 0.22 +2.1 398,163 - Psyr_0374 0.22 +1.9 398,163 - Psyr_0374 0.22 +1.8 398,163 - Psyr_0374 0.22 +1.2 398,163 - Psyr_0374 0.22 -1.7 398,163 - Psyr_0374 0.22 -0.9 398,163 - Psyr_0374 0.22 -0.2 398,163 - Psyr_0374 0.22 +0.7 398,163 - Psyr_0374 0.22 +0.4 398,163 - Psyr_0374 0.22 -0.8 398,163 - Psyr_0374 0.22 +1.8 398,267 + Psyr_0374 0.27 -3.2 398,267 + Psyr_0374 0.27 -1.3 398,345 + Psyr_0374 0.30 +0.7 398,387 + Psyr_0374 0.32 +0.7 398,897 + Psyr_0374 0.52 +2.0 398,897 + Psyr_0374 0.52 -0.3 398,897 + Psyr_0374 0.52 -1.8 398,897 + Psyr_0374 0.52 -1.7 398,897 + Psyr_0374 0.52 -1.3 398,897 + Psyr_0374 0.52 +2.5 398,898 - Psyr_0374 0.52 +1.8 398,898 - Psyr_0374 0.52 -2.1 398,987 + Psyr_0374 0.56 -0.6 398,987 + Psyr_0374 0.56 -0.4 398,988 - Psyr_0374 0.56 +1.9 398,988 - Psyr_0374 0.56 +1.2 399,195 - Psyr_0374 0.65 -1.8 399,261 + Psyr_0374 0.67 +1.1 399,262 - Psyr_0374 0.67 +0.5 399,338 - Psyr_0374 0.70 +0.6 399,338 - Psyr_0374 0.70 -2.9 399,379 - Psyr_0374 0.72 +0.9 399,407 + Psyr_0374 0.73 +1.2 399,407 + Psyr_0374 0.73 -1.3 399,442 + Psyr_0374 0.75 -2.7 399,442 + Psyr_0374 0.75 -1.5 399,443 - Psyr_0374 0.75 -1.1 399,443 - Psyr_0374 0.75 +2.2 399,506 + Psyr_0374 0.77 -2.1 399,506 + Psyr_0374 0.77 +0.5 399,506 + Psyr_0374 0.77 +0.5 399,507 - Psyr_0374 0.77 +0.6 399,507 - Psyr_0374 0.77 +0.2 399,812 + Psyr_0374 0.90 -0.6 399,813 - Psyr_0374 0.90 -0.7 399,813 - Psyr_0374 0.90 +1.8 399,848 + -0.7 399,848 + +0.1 399,849 - -0.2 399,849 - +1.9 399,849 - -2.7 399,852 - -0.0 399,875 + -2.2 399,876 - +0.1 399,876 - -1.0 399,888 + +2.0 399,888 + +1.2 399,889 - +1.0 399,912 + +0.5 399,990 - +3.2 399,990 - +1.0 399,990 - -2.6 400,078 + -0.4 400,106 + -1.1 400,106 + +1.0 400,107 - +1.5 400,107 - +0.6 400,114 - +2.8 400,114 - +1.6 400,114 - -1.1 400,130 - +0.1 400,130 - -1.7 400,130 - -0.9 400,152 - +0.3 400,163 + +4.7 400,163 + +0.1 400,163 + +0.9 400,163 + +0.1 400,163 + +1.2 400,163 + -1.7 400,163 + +1.9 400,163 + +0.9 400,163 + +1.1 400,163 + +0.4 400,163 + -3.0 400,163 + +0.6 400,163 + -2.4 400,163 + +1.0 400,164 - +1.2 400,164 - -0.1 400,164 - -1.6 400,164 - -2.0 400,287 + +1.3 400,287 + +0.0 400,287 + +0.5 400,287 + +0.9 400,287 + -0.0 400,288 - +0.3 400,307 + +0.7 400,307 + +1.5 400,307 + -0.8 400,307 + +1.9 400,308 - +1.1 400,310 + +0.0 400,310 + +1.1 400,310 + +0.0 400,310 + -2.3 400,310 + -2.7 400,310 + -4.0 400,310 + -0.9 400,311 - +0.9 400,311 - +0.2 400,311 - +0.8 400,311 - -1.4 400,311 - -0.9 400,311 - -1.2 400,311 - -0.2 400,311 - -2.1 400,311 - +0.4 400,311 - -1.2 400,331 + +1.7 400,331 + -0.1 400,331 + +1.5 400,331 + -0.5 400,331 + -1.5 400,342 + -1.3 400,342 + +0.8 400,342 + +0.5 400,342 + +0.8 400,342 + -1.9 400,342 + -1.4 400,342 + +1.0 400,342 + +1.5 400,342 + -1.1 400,342 + -1.3 400,343 - -0.1 400,343 - +0.1 400,343 - +1.9 400,343 - -2.6 400,343 - -2.0 400,343 - +1.5 400,343 - -0.7 400,343 - -4.0 400,343 - +0.1 400,343 - -0.9 400,343 - +1.6 400,415 + +0.3 400,415 + -1.1 400,416 - +1.7 400,416 - +1.4 400,460 - Psyr_0375 0.12 +0.3 400,506 - Psyr_0375 0.17 -3.5 400,506 - Psyr_0375 0.17 +1.1 400,506 - Psyr_0375 0.17 -2.0 400,506 - Psyr_0375 0.17 -1.5 400,697 + Psyr_0375 0.36 -1.0 400,697 + Psyr_0375 0.36 +0.8 400,697 + Psyr_0375 0.36 +0.4 400,697 + Psyr_0375 0.36 +1.5 400,781 + Psyr_0375 0.45 -3.1 400,781 + Psyr_0375 0.45 +1.5 400,814 + Psyr_0375 0.48 +0.6 400,814 + Psyr_0375 0.48 +0.7 400,814 + Psyr_0375 0.48 -3.4 400,815 - Psyr_0375 0.49 -2.0 400,815 - Psyr_0375 0.49 +0.7 400,815 - Psyr_0375 0.49 -0.4 400,826 + Psyr_0375 0.50 +0.3 400,826 + Psyr_0375 0.50 +1.8 400,826 + Psyr_0375 0.50 +1.7 400,826 + Psyr_0375 0.50 -1.7 400,827 - Psyr_0375 0.50 +0.4 400,827 - Psyr_0375 0.50 -2.8 400,827 - Psyr_0375 0.50 -1.3 401,040 - Psyr_0375 0.72 +1.4 401,040 - Psyr_0375 0.72 -0.1 401,040 - Psyr_0375 0.72 +0.2
Or see this region's nucleotide sequence