Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_680

Experiment: bromate 0.05 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_678 and Pf6N2E2_679 overlap by 4 nucleotidesPf6N2E2_679 and Pf6N2E2_680 are separated by 191 nucleotidesPf6N2E2_680 and Pf6N2E2_681 overlap by 4 nucleotides Pf6N2E2_678 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 783,039 to 784,295 _678 Pf6N2E2_679 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 784,292 to 784,528 _679 Pf6N2E2_680 - D-amino-acid oxidase (EC 1.4.3.3), at 784,720 to 785,835 _680 Pf6N2E2_681 - 4-hydroxyproline epimerase (EC 5.1.1.8), at 785,832 to 786,764 _681 Position (kb) 784 785 786Strain fitness (log2 ratio) -2 -1 0 1at 784.000 kb on + strand, within Pf6N2E2_678at 784.001 kb on - strand, within Pf6N2E2_678at 784.047 kb on - strand, within Pf6N2E2_678at 784.089 kb on + strand, within Pf6N2E2_678at 784.089 kb on + strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.090 kb on - strand, within Pf6N2E2_678at 784.387 kb on + strand, within Pf6N2E2_679at 784.387 kb on + strand, within Pf6N2E2_679at 784.517 kb on + strandat 784.518 kb on - strandat 784.760 kb on + strandat 784.760 kb on + strandat 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.092 kb on + strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.093 kb on - strand, within Pf6N2E2_680at 785.094 kb on + strand, within Pf6N2E2_680at 785.094 kb on + strand, within Pf6N2E2_680at 785.095 kb on - strand, within Pf6N2E2_680at 785.095 kb on - strand, within Pf6N2E2_680at 785.142 kb on - strand, within Pf6N2E2_680at 785.142 kb on - strand, within Pf6N2E2_680at 785.397 kb on - strand, within Pf6N2E2_680at 785.522 kb on + strand, within Pf6N2E2_680at 785.522 kb on + strand, within Pf6N2E2_680at 785.523 kb on - strand, within Pf6N2E2_680at 785.947 kb on + strand, within Pf6N2E2_681at 785.947 kb on + strand, within Pf6N2E2_681at 786.073 kb on + strand, within Pf6N2E2_681at 786.074 kb on - strand, within Pf6N2E2_681at 786.093 kb on + strand, within Pf6N2E2_681at 786.093 kb on + strand, within Pf6N2E2_681at 786.198 kb on + strand, within Pf6N2E2_681at 786.206 kb on - strand, within Pf6N2E2_681at 786.206 kb on - strand, within Pf6N2E2_681at 786.206 kb on - strand, within Pf6N2E2_681at 786.211 kb on + strand, within Pf6N2E2_681at 786.355 kb on + strand, within Pf6N2E2_681at 786.355 kb on + strand, within Pf6N2E2_681at 786.408 kb on + strand, within Pf6N2E2_681at 786.832 kb on - strandat 786.832 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction bromate 0.05 M
remove
784,000 + Pf6N2E2_678 0.76 -0.8
784,001 - Pf6N2E2_678 0.77 +0.4
784,047 - Pf6N2E2_678 0.80 +1.3
784,089 + Pf6N2E2_678 0.84 -0.4
784,089 + Pf6N2E2_678 0.84 -2.4
784,090 - Pf6N2E2_678 0.84 -0.6
784,090 - Pf6N2E2_678 0.84 +1.0
784,090 - Pf6N2E2_678 0.84 -0.4
784,090 - Pf6N2E2_678 0.84 +1.5
784,387 + Pf6N2E2_679 0.40 +1.6
784,387 + Pf6N2E2_679 0.40 -0.7
784,517 + -0.4
784,518 - +1.3
784,760 + +1.1
784,760 + -1.7
785,092 + Pf6N2E2_680 0.33 +0.4
785,092 + Pf6N2E2_680 0.33 -0.0
785,092 + Pf6N2E2_680 0.33 -1.7
785,092 + Pf6N2E2_680 0.33 -1.2
785,092 + Pf6N2E2_680 0.33 -0.0
785,093 - Pf6N2E2_680 0.33 +0.6
785,093 - Pf6N2E2_680 0.33 -2.0
785,093 - Pf6N2E2_680 0.33 +1.0
785,093 - Pf6N2E2_680 0.33 -0.0
785,093 - Pf6N2E2_680 0.33 -2.0
785,093 - Pf6N2E2_680 0.33 -0.5
785,093 - Pf6N2E2_680 0.33 -1.3
785,094 + Pf6N2E2_680 0.34 +0.2
785,094 + Pf6N2E2_680 0.34 +1.1
785,095 - Pf6N2E2_680 0.34 +0.4
785,095 - Pf6N2E2_680 0.34 +1.1
785,142 - Pf6N2E2_680 0.38 -1.5
785,142 - Pf6N2E2_680 0.38 -2.0
785,397 - Pf6N2E2_680 0.61 -0.0
785,522 + Pf6N2E2_680 0.72 -0.0
785,522 + Pf6N2E2_680 0.72 -0.6
785,523 - Pf6N2E2_680 0.72 -0.6
785,947 + Pf6N2E2_681 0.12 +1.4
785,947 + Pf6N2E2_681 0.12 -1.2
786,073 + Pf6N2E2_681 0.26 -0.6
786,074 - Pf6N2E2_681 0.26 +0.6
786,093 + Pf6N2E2_681 0.28 +0.5
786,093 + Pf6N2E2_681 0.28 -0.3
786,198 + Pf6N2E2_681 0.39 +0.2
786,206 - Pf6N2E2_681 0.40 -1.2
786,206 - Pf6N2E2_681 0.40 -1.8
786,206 - Pf6N2E2_681 0.40 +0.9
786,211 + Pf6N2E2_681 0.41 -1.0
786,355 + Pf6N2E2_681 0.56 +0.4
786,355 + Pf6N2E2_681 0.56 -1.0
786,408 + Pf6N2E2_681 0.62 +0.4
786,832 - -1.1
786,832 - -0.5

Or see this region's nucleotide sequence