Experiment: bromate 0.05 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_611 and Pf6N2E2_612 are separated by 12 nucleotides Pf6N2E2_612 and Pf6N2E2_613 are separated by 118 nucleotides Pf6N2E2_613 and Pf6N2E2_614 overlap by 14 nucleotides
Pf6N2E2_611 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) <small>(from data)</small>, at 694,827 to 695,819
_611
Pf6N2E2_612 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) <small>(from data)</small>, at 695,832 to 697,412
_612
Pf6N2E2_613 - lipoprotein, putative, at 697,531 to 697,869
_613
Pf6N2E2_614 - 3-carboxymuconate cyclase, at 697,856 to 699,031
_614
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.834 kb on + strand at 694.835 kb on - strand at 694.835 kb on - strand at 695.007 kb on + strand, within Pf6N2E2_611 at 695.245 kb on - strand, within Pf6N2E2_611 at 695.343 kb on + strand, within Pf6N2E2_611 at 695.343 kb on + strand at 695.343 kb on + strand, within Pf6N2E2_611 at 695.343 kb on + strand, within Pf6N2E2_611 at 695.344 kb on - strand, within Pf6N2E2_611 at 695.344 kb on - strand, within Pf6N2E2_611 at 695.430 kb on + strand, within Pf6N2E2_611 at 695.430 kb on + strand, within Pf6N2E2_611 at 695.431 kb on - strand, within Pf6N2E2_611 at 695.431 kb on - strand, within Pf6N2E2_611 at 695.431 kb on - strand, within Pf6N2E2_611 at 695.436 kb on + strand, within Pf6N2E2_611 at 695.625 kb on + strand, within Pf6N2E2_611 at 695.626 kb on - strand, within Pf6N2E2_611 at 695.817 kb on + strand at 695.818 kb on - strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.856 kb on + strand at 695.857 kb on - strand at 695.857 kb on - strand at 695.857 kb on - strand at 695.857 kb on - strand at 695.857 kb on - strand at 696.308 kb on + strand, within Pf6N2E2_612 at 696.309 kb on - strand, within Pf6N2E2_612 at 696.486 kb on + strand, within Pf6N2E2_612 at 696.735 kb on - strand, within Pf6N2E2_612 at 696.858 kb on + strand, within Pf6N2E2_612 at 697.705 kb on - strand, within Pf6N2E2_613 at 697.985 kb on + strand, within Pf6N2E2_614 at 697.986 kb on - strand, within Pf6N2E2_614 at 697.986 kb on - strand, within Pf6N2E2_614 at 697.986 kb on - strand, within Pf6N2E2_614 at 697.986 kb on - strand, within Pf6N2E2_614 at 698.153 kb on + strand, within Pf6N2E2_614 at 698.153 kb on + strand, within Pf6N2E2_614 at 698.266 kb on + strand, within Pf6N2E2_614 at 698.266 kb on + strand, within Pf6N2E2_614 at 698.270 kb on + strand, within Pf6N2E2_614 at 698.270 kb on + strand, within Pf6N2E2_614 at 698.270 kb on + strand, within Pf6N2E2_614 at 698.271 kb on - strand, within Pf6N2E2_614 at 698.271 kb on - strand, within Pf6N2E2_614
Per-strain Table
Position Strand Gene LocusTag Fraction bromate 0.05 M remove 694,834 + +1.6 694,835 - -0.7 694,835 - +1.4 695,007 + Pf6N2E2_611 0.18 -0.1 695,245 - Pf6N2E2_611 0.42 -1.1 695,343 + Pf6N2E2_611 0.52 +0.3 695,343 + +2.6 695,343 + Pf6N2E2_611 0.52 +0.4 695,343 + Pf6N2E2_611 0.52 -0.2 695,344 - Pf6N2E2_611 0.52 +1.0 695,344 - Pf6N2E2_611 0.52 -0.2 695,430 + Pf6N2E2_611 0.61 +0.4 695,430 + Pf6N2E2_611 0.61 -2.5 695,431 - Pf6N2E2_611 0.61 -1.6 695,431 - Pf6N2E2_611 0.61 +1.0 695,431 - Pf6N2E2_611 0.61 +0.3 695,436 + Pf6N2E2_611 0.61 -2.1 695,625 + Pf6N2E2_611 0.80 -0.0 695,626 - Pf6N2E2_611 0.80 -2.4 695,817 + +1.3 695,818 - +1.8 695,856 + -0.0 695,856 + -1.1 695,856 + -0.5 695,856 + +0.7 695,856 + +0.4 695,856 + -0.0 695,856 + +0.8 695,856 + -1.6 695,857 - +1.6 695,857 - +0.2 695,857 - -1.9 695,857 - +1.2 695,857 - +0.6 696,308 + Pf6N2E2_612 0.30 -3.5 696,309 - Pf6N2E2_612 0.30 -1.2 696,486 + Pf6N2E2_612 0.41 -0.6 696,735 - Pf6N2E2_612 0.57 -0.5 696,858 + Pf6N2E2_612 0.65 -0.5 697,705 - Pf6N2E2_613 0.51 -1.6 697,985 + Pf6N2E2_614 0.11 -0.6 697,986 - Pf6N2E2_614 0.11 -0.4 697,986 - Pf6N2E2_614 0.11 +0.5 697,986 - Pf6N2E2_614 0.11 -0.4 697,986 - Pf6N2E2_614 0.11 -0.2 698,153 + Pf6N2E2_614 0.25 +0.4 698,153 + Pf6N2E2_614 0.25 +0.4 698,266 + Pf6N2E2_614 0.35 +0.1 698,266 + Pf6N2E2_614 0.35 -0.3 698,270 + Pf6N2E2_614 0.35 +0.2 698,270 + Pf6N2E2_614 0.35 +1.4 698,270 + Pf6N2E2_614 0.35 -0.6 698,271 - Pf6N2E2_614 0.35 -0.4 698,271 - Pf6N2E2_614 0.35 -0.3
Or see this region's nucleotide sequence