Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_575

Experiment: bromate 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_573 and Pf6N2E2_574 are separated by 143 nucleotidesPf6N2E2_574 and Pf6N2E2_575 are separated by 218 nucleotidesPf6N2E2_575 and Pf6N2E2_576 are separated by 138 nucleotides Pf6N2E2_573 - Potassium uptake protein TrkH, at 647,101 to 648,555 _573 Pf6N2E2_574 - Transporter, LysE family, at 648,699 to 649,286 _574 Pf6N2E2_575 - Transcriptional regulator, AraC family, at 649,505 to 650,329 _575 Pf6N2E2_576 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 650,468 to 651,430 _576 Position (kb) 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2at 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.587 kb on - strandat 648.659 kb on + strandat 648.659 kb on + strandat 648.682 kb on + strandat 648.682 kb on + strandat 648.683 kb on - strandat 648.683 kb on - strandat 648.683 kb on - strandat 648.693 kb on + strandat 648.746 kb on + strandat 648.746 kb on + strandat 648.747 kb on - strandat 648.747 kb on - strandat 649.020 kb on + strand, within Pf6N2E2_574at 649.020 kb on + strand, within Pf6N2E2_574at 649.134 kb on + strand, within Pf6N2E2_574at 649.135 kb on - strand, within Pf6N2E2_574at 649.135 kb on - strand, within Pf6N2E2_574at 649.149 kb on + strand, within Pf6N2E2_574at 649.205 kb on + strand, within Pf6N2E2_574at 649.269 kb on + strandat 649.269 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.327 kb on - strandat 649.327 kb on - strandat 649.337 kb on + strandat 649.504 kb on - strandat 649.516 kb on - strandat 649.710 kb on + strand, within Pf6N2E2_575at 649.710 kb on + strand, within Pf6N2E2_575at 649.711 kb on - strand, within Pf6N2E2_575at 649.780 kb on + strand, within Pf6N2E2_575at 649.781 kb on - strand, within Pf6N2E2_575at 649.914 kb on - strand, within Pf6N2E2_575at 649.926 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.052 kb on + strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.053 kb on - strand, within Pf6N2E2_575at 650.064 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.169 kb on + strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.170 kb on - strand, within Pf6N2E2_575at 650.366 kb on + strandat 650.366 kb on + strandat 650.366 kb on + strandat 650.367 kb on - strandat 650.367 kb on - strandat 650.369 kb on + strandat 650.369 kb on + strandat 650.836 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 650.848 kb on + strand, within Pf6N2E2_576at 651.157 kb on + strand, within Pf6N2E2_576at 651.158 kb on - strand, within Pf6N2E2_576at 651.308 kb on + strand, within Pf6N2E2_576

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Per-strain Table

Position Strand Gene LocusTag Fraction bromate 0.05 M
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648,555 + -0.7
648,555 + +0.6
648,555 + -0.6
648,555 + +1.4
648,555 + -0.2
648,555 + +1.1
648,555 + +0.1
648,556 - -2.0
648,556 - +0.4
648,556 - -0.0
648,556 - -0.9
648,587 - +1.0
648,659 + +0.3
648,659 + -0.0
648,682 + -0.1
648,682 + -0.6
648,683 - -0.1
648,683 - +0.7
648,683 - +0.5
648,693 + +0.2
648,746 + +0.1
648,746 + +0.3
648,747 - +0.7
648,747 - -0.7
649,020 + Pf6N2E2_574 0.55 -0.3
649,020 + Pf6N2E2_574 0.55 -0.3
649,134 + Pf6N2E2_574 0.74 -0.1
649,135 - Pf6N2E2_574 0.74 +1.4
649,135 - Pf6N2E2_574 0.74 +0.8
649,149 + Pf6N2E2_574 0.77 +1.0
649,205 + Pf6N2E2_574 0.86 -0.3
649,269 + -1.0
649,269 + +1.0
649,273 + +0.4
649,273 + +0.3
649,273 + -0.8
649,273 + +0.2
649,326 + +1.5
649,326 + -0.4
649,326 + -1.9
649,326 + +0.9
649,327 - +0.2
649,327 - -0.0
649,337 + -1.5
649,504 - +1.5
649,516 - -0.4
649,710 + Pf6N2E2_575 0.25 -0.8
649,710 + Pf6N2E2_575 0.25 +0.6
649,711 - Pf6N2E2_575 0.25 +0.8
649,780 + Pf6N2E2_575 0.33 +1.1
649,781 - Pf6N2E2_575 0.33 -0.6
649,914 - Pf6N2E2_575 0.50 -1.9
649,926 + Pf6N2E2_575 0.51 +0.7
650,052 + Pf6N2E2_575 0.66 +0.3
650,052 + Pf6N2E2_575 0.66 -0.5
650,052 + Pf6N2E2_575 0.66 -0.4
650,053 - Pf6N2E2_575 0.66 +0.5
650,053 - Pf6N2E2_575 0.66 +0.6
650,053 - Pf6N2E2_575 0.66 -0.4
650,064 + Pf6N2E2_575 0.68 -0.1
650,169 + Pf6N2E2_575 0.80 +1.8
650,169 + Pf6N2E2_575 0.80 +0.9
650,169 + Pf6N2E2_575 0.80 -1.3
650,169 + Pf6N2E2_575 0.80 +0.8
650,169 + Pf6N2E2_575 0.80 +0.4
650,170 - Pf6N2E2_575 0.81 +1.4
650,170 - Pf6N2E2_575 0.81 +0.4
650,170 - Pf6N2E2_575 0.81 +1.0
650,366 + +0.5
650,366 + +0.3
650,366 + -0.6
650,367 - +0.1
650,367 - +0.4
650,369 + +2.4
650,369 + -0.8
650,836 + Pf6N2E2_576 0.38 -0.7
650,848 + Pf6N2E2_576 0.39 -2.0
650,848 + Pf6N2E2_576 0.39 +1.2
650,848 + Pf6N2E2_576 0.39 -1.1
650,848 + Pf6N2E2_576 0.39 +0.2
650,848 + Pf6N2E2_576 0.39 -0.2
651,157 + Pf6N2E2_576 0.72 -1.0
651,158 - Pf6N2E2_576 0.72 -1.1
651,308 + Pf6N2E2_576 0.87 -0.8

Or see this region's nucleotide sequence