Experiment: bromate 0.05 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4673 and Pf6N2E2_4674 are separated by 265 nucleotides Pf6N2E2_4674 and Pf6N2E2_4675 are separated by 194 nucleotides
Pf6N2E2_4673 - ATP-dependent 23S rRNA helicase DbpA, at 5,403,949 to 5,405,334
_4673
Pf6N2E2_4674 - Permeases of the major facilitator superfamily, at 5,405,600 to 5,407,027
_4674
Pf6N2E2_4675 - TldE/PmbA family protein, Beta/Gamma-proteobacterial subgroup, at 5,407,222 to 5,408,559
_4675
Position (kb)
5405
5406
5407
5408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5404.657 kb on + strand, within Pf6N2E2_4673 at 5404.657 kb on + strand, within Pf6N2E2_4673 at 5404.658 kb on - strand, within Pf6N2E2_4673 at 5404.664 kb on + strand, within Pf6N2E2_4673 at 5404.665 kb on - strand, within Pf6N2E2_4673 at 5404.767 kb on - strand, within Pf6N2E2_4673 at 5405.310 kb on + strand at 5405.310 kb on + strand at 5405.369 kb on + strand at 5405.369 kb on + strand at 5405.369 kb on + strand at 5405.370 kb on - strand at 5405.370 kb on - strand at 5405.466 kb on - strand at 5405.492 kb on - strand at 5405.602 kb on - strand at 5405.602 kb on - strand at 5405.602 kb on - strand at 5405.602 kb on - strand at 5405.602 kb on - strand at 5405.611 kb on + strand at 5405.612 kb on - strand at 5406.132 kb on + strand, within Pf6N2E2_4674 at 5406.291 kb on + strand, within Pf6N2E2_4674 at 5406.291 kb on + strand, within Pf6N2E2_4674 at 5406.480 kb on + strand, within Pf6N2E2_4674 at 5406.481 kb on - strand, within Pf6N2E2_4674 at 5406.538 kb on - strand, within Pf6N2E2_4674 at 5406.855 kb on + strand, within Pf6N2E2_4674 at 5406.855 kb on + strand, within Pf6N2E2_4674 at 5406.855 kb on + strand, within Pf6N2E2_4674 at 5406.856 kb on - strand, within Pf6N2E2_4674 at 5406.856 kb on - strand, within Pf6N2E2_4674 at 5407.039 kb on + strand at 5407.039 kb on + strand at 5407.039 kb on + strand at 5407.039 kb on + strand at 5407.039 kb on + strand at 5407.040 kb on - strand at 5407.040 kb on - strand at 5407.040 kb on - strand at 5407.040 kb on - strand at 5407.040 kb on - strand at 5407.040 kb on - strand at 5407.040 kb on - strand at 5407.064 kb on - strand at 5407.208 kb on + strand at 5407.223 kb on + strand at 5407.223 kb on + strand at 5407.223 kb on + strand at 5407.223 kb on + strand at 5407.224 kb on - strand at 5407.224 kb on - strand at 5407.224 kb on - strand at 5407.224 kb on - strand at 5407.224 kb on - strand at 5407.292 kb on + strand at 5407.292 kb on + strand at 5407.293 kb on - strand at 5407.293 kb on - strand at 5407.361 kb on + strand, within Pf6N2E2_4675 at 5407.476 kb on - strand, within Pf6N2E2_4675 at 5407.502 kb on + strand, within Pf6N2E2_4675 at 5407.503 kb on - strand, within Pf6N2E2_4675 at 5407.503 kb on - strand, within Pf6N2E2_4675 at 5407.503 kb on - strand, within Pf6N2E2_4675 at 5407.503 kb on - strand, within Pf6N2E2_4675 at 5407.532 kb on + strand, within Pf6N2E2_4675 at 5407.532 kb on + strand, within Pf6N2E2_4675 at 5407.532 kb on + strand, within Pf6N2E2_4675 at 5407.532 kb on + strand, within Pf6N2E2_4675 at 5407.532 kb on + strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.533 kb on - strand, within Pf6N2E2_4675 at 5407.583 kb on + strand, within Pf6N2E2_4675 at 5407.583 kb on + strand, within Pf6N2E2_4675 at 5407.583 kb on + strand, within Pf6N2E2_4675 at 5407.584 kb on - strand, within Pf6N2E2_4675 at 5407.584 kb on - strand, within Pf6N2E2_4675 at 5407.584 kb on - strand, within Pf6N2E2_4675 at 5407.880 kb on + strand, within Pf6N2E2_4675 at 5407.880 kb on + strand, within Pf6N2E2_4675 at 5407.881 kb on - strand, within Pf6N2E2_4675 at 5407.998 kb on - strand, within Pf6N2E2_4675 at 5407.998 kb on - strand, within Pf6N2E2_4675
Per-strain Table
Position Strand Gene LocusTag Fraction bromate 0.05 M remove 5,404,657 + Pf6N2E2_4673 0.51 +0.4 5,404,657 + Pf6N2E2_4673 0.51 -1.2 5,404,658 - Pf6N2E2_4673 0.51 +0.2 5,404,664 + Pf6N2E2_4673 0.52 +0.4 5,404,665 - Pf6N2E2_4673 0.52 -1.2 5,404,767 - Pf6N2E2_4673 0.59 -2.0 5,405,310 + +2.5 5,405,310 + +1.4 5,405,369 + +0.6 5,405,369 + +1.2 5,405,369 + +0.4 5,405,370 - -0.7 5,405,370 - +0.3 5,405,466 - +0.2 5,405,492 - -1.1 5,405,602 - -2.0 5,405,602 - +0.6 5,405,602 - -1.4 5,405,602 - -2.2 5,405,602 - -1.9 5,405,611 + -0.1 5,405,612 - +0.6 5,406,132 + Pf6N2E2_4674 0.37 -0.3 5,406,291 + Pf6N2E2_4674 0.48 -2.3 5,406,291 + Pf6N2E2_4674 0.48 -0.6 5,406,480 + Pf6N2E2_4674 0.62 -0.9 5,406,481 - Pf6N2E2_4674 0.62 +0.1 5,406,538 - Pf6N2E2_4674 0.66 -1.3 5,406,855 + Pf6N2E2_4674 0.88 -1.1 5,406,855 + Pf6N2E2_4674 0.88 -0.0 5,406,855 + Pf6N2E2_4674 0.88 -2.3 5,406,856 - Pf6N2E2_4674 0.88 -1.3 5,406,856 - Pf6N2E2_4674 0.88 -0.5 5,407,039 + +0.6 5,407,039 + -0.9 5,407,039 + +0.8 5,407,039 + +0.1 5,407,039 + -0.6 5,407,040 - -0.1 5,407,040 - -2.9 5,407,040 - -1.8 5,407,040 - -0.6 5,407,040 - -1.7 5,407,040 - +0.8 5,407,040 - -1.0 5,407,064 - -0.8 5,407,208 + -0.9 5,407,223 + +0.6 5,407,223 + -2.4 5,407,223 + -0.1 5,407,223 + -1.6 5,407,224 - -1.2 5,407,224 - +1.2 5,407,224 - +1.0 5,407,224 - -0.2 5,407,224 - +0.4 5,407,292 + -2.4 5,407,292 + -0.6 5,407,293 - -2.5 5,407,293 - +0.2 5,407,361 + Pf6N2E2_4675 0.10 -2.2 5,407,476 - Pf6N2E2_4675 0.19 +0.4 5,407,502 + Pf6N2E2_4675 0.21 -0.0 5,407,503 - Pf6N2E2_4675 0.21 -1.2 5,407,503 - Pf6N2E2_4675 0.21 +0.5 5,407,503 - Pf6N2E2_4675 0.21 +1.2 5,407,503 - Pf6N2E2_4675 0.21 -0.4 5,407,532 + Pf6N2E2_4675 0.23 -0.0 5,407,532 + Pf6N2E2_4675 0.23 +1.8 5,407,532 + Pf6N2E2_4675 0.23 +0.6 5,407,532 + Pf6N2E2_4675 0.23 -0.9 5,407,532 + Pf6N2E2_4675 0.23 -0.4 5,407,533 - Pf6N2E2_4675 0.23 +2.1 5,407,533 - Pf6N2E2_4675 0.23 -0.9 5,407,533 - Pf6N2E2_4675 0.23 +0.8 5,407,533 - Pf6N2E2_4675 0.23 -0.1 5,407,533 - Pf6N2E2_4675 0.23 +0.7 5,407,533 - Pf6N2E2_4675 0.23 -0.4 5,407,533 - Pf6N2E2_4675 0.23 -0.1 5,407,533 - Pf6N2E2_4675 0.23 +1.1 5,407,533 - Pf6N2E2_4675 0.23 -0.4 5,407,533 - Pf6N2E2_4675 0.23 -0.0 5,407,533 - Pf6N2E2_4675 0.23 +0.6 5,407,583 + Pf6N2E2_4675 0.27 -0.6 5,407,583 + Pf6N2E2_4675 0.27 -1.2 5,407,583 + Pf6N2E2_4675 0.27 +0.8 5,407,584 - Pf6N2E2_4675 0.27 +0.8 5,407,584 - Pf6N2E2_4675 0.27 -1.8 5,407,584 - Pf6N2E2_4675 0.27 -1.4 5,407,880 + Pf6N2E2_4675 0.49 -0.5 5,407,880 + Pf6N2E2_4675 0.49 -0.1 5,407,881 - Pf6N2E2_4675 0.49 +0.6 5,407,998 - Pf6N2E2_4675 0.58 -2.2 5,407,998 - Pf6N2E2_4675 0.58 +1.1
Or see this region's nucleotide sequence