Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_456

Experiment: bromate 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_455 and Pf6N2E2_456 are separated by 250 nucleotidesPf6N2E2_456 and Pf6N2E2_457 are separated by 103 nucleotides Pf6N2E2_455 - Permease of the drug/metabolite transporter (DMT) superfamily, at 518,251 to 519,195 _455 Pf6N2E2_456 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data), at 519,446 to 520,522 _456 Pf6N2E2_457 - hypothetical protein, at 520,626 to 521,573 _457 Position (kb) 519 520 521Strain fitness (log2 ratio) -2 -1 0 1at 518.522 kb on - strand, within Pf6N2E2_455at 518.539 kb on + strand, within Pf6N2E2_455at 518.539 kb on + strand, within Pf6N2E2_455at 518.539 kb on + strand, within Pf6N2E2_455at 518.539 kb on + strand, within Pf6N2E2_455at 518.539 kb on + strand, within Pf6N2E2_455at 518.540 kb on - strand, within Pf6N2E2_455at 518.540 kb on - strand, within Pf6N2E2_455at 518.551 kb on + strand, within Pf6N2E2_455at 518.551 kb on + strand, within Pf6N2E2_455at 518.552 kb on - strand, within Pf6N2E2_455at 518.552 kb on - strand, within Pf6N2E2_455at 518.552 kb on - strand, within Pf6N2E2_455at 518.788 kb on + strand, within Pf6N2E2_455at 518.788 kb on + strand, within Pf6N2E2_455at 518.788 kb on + strand, within Pf6N2E2_455at 518.788 kb on + strand, within Pf6N2E2_455at 518.789 kb on - strand, within Pf6N2E2_455at 518.789 kb on - strand, within Pf6N2E2_455at 518.986 kb on + strand, within Pf6N2E2_455at 518.987 kb on - strand, within Pf6N2E2_455at 518.987 kb on - strand, within Pf6N2E2_455at 518.988 kb on + strand, within Pf6N2E2_455at 519.245 kb on + strandat 519.247 kb on + strandat 519.247 kb on + strandat 519.248 kb on - strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.330 kb on + strandat 519.330 kb on + strandat 519.419 kb on - strandat 519.456 kb on + strandat 519.456 kb on + strandat 519.456 kb on + strandat 519.457 kb on - strandat 519.650 kb on + strand, within Pf6N2E2_456at 519.651 kb on - strand, within Pf6N2E2_456at 519.651 kb on - strand, within Pf6N2E2_456at 519.857 kb on + strand, within Pf6N2E2_456at 519.857 kb on + strand, within Pf6N2E2_456at 519.858 kb on - strand, within Pf6N2E2_456at 519.858 kb on - strand, within Pf6N2E2_456at 519.858 kb on - strand, within Pf6N2E2_456at 519.858 kb on - strand, within Pf6N2E2_456at 519.858 kb on - strand, within Pf6N2E2_456at 519.965 kb on + strand, within Pf6N2E2_456at 519.965 kb on + strand, within Pf6N2E2_456at 519.980 kb on + strand, within Pf6N2E2_456at 519.981 kb on - strand, within Pf6N2E2_456at 520.034 kb on + strand, within Pf6N2E2_456at 520.034 kb on + strand, within Pf6N2E2_456at 520.035 kb on - strand, within Pf6N2E2_456at 520.252 kb on + strand, within Pf6N2E2_456at 520.253 kb on - strand, within Pf6N2E2_456at 520.253 kb on - strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.256 kb on + strand, within Pf6N2E2_456at 520.257 kb on - strand, within Pf6N2E2_456at 520.257 kb on - strand, within Pf6N2E2_456at 520.257 kb on - strand, within Pf6N2E2_456at 520.257 kb on - strand, within Pf6N2E2_456at 520.257 kb on - strand, within Pf6N2E2_456at 520.257 kb on - strand, within Pf6N2E2_456at 520.520 kb on + strandat 520.583 kb on - strandat 520.608 kb on - strandat 520.608 kb on - strandat 520.608 kb on - strandat 520.608 kb on - strandat 520.608 kb on - strandat 520.608 kb on - strandat 520.628 kb on - strandat 520.628 kb on - strandat 520.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction bromate 0.05 M
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518,522 - Pf6N2E2_455 0.29 +1.1
518,539 + Pf6N2E2_455 0.30 -1.8
518,539 + Pf6N2E2_455 0.30 +0.7
518,539 + Pf6N2E2_455 0.30 -0.1
518,539 + Pf6N2E2_455 0.30 -0.2
518,539 + Pf6N2E2_455 0.30 -0.1
518,540 - Pf6N2E2_455 0.31 +0.9
518,540 - Pf6N2E2_455 0.31 +0.2
518,551 + Pf6N2E2_455 0.32 -2.3
518,551 + Pf6N2E2_455 0.32 -2.0
518,552 - Pf6N2E2_455 0.32 -1.0
518,552 - Pf6N2E2_455 0.32 +0.4
518,552 - Pf6N2E2_455 0.32 -2.6
518,788 + Pf6N2E2_455 0.57 +0.3
518,788 + Pf6N2E2_455 0.57 +0.0
518,788 + Pf6N2E2_455 0.57 -1.7
518,788 + Pf6N2E2_455 0.57 -0.3
518,789 - Pf6N2E2_455 0.57 +0.4
518,789 - Pf6N2E2_455 0.57 -1.2
518,986 + Pf6N2E2_455 0.78 +1.6
518,987 - Pf6N2E2_455 0.78 -0.1
518,987 - Pf6N2E2_455 0.78 -0.4
518,988 + Pf6N2E2_455 0.78 +1.7
519,245 + -0.3
519,247 + +0.5
519,247 + +1.2
519,248 - +0.9
519,310 + -2.5
519,310 + -0.8
519,310 + -1.1
519,310 + -2.0
519,310 + +0.0
519,330 + +1.4
519,330 + +0.2
519,419 - -0.7
519,456 + -0.9
519,456 + -1.1
519,456 + -0.1
519,457 - -1.8
519,650 + Pf6N2E2_456 0.19 +0.1
519,651 - Pf6N2E2_456 0.19 -2.5
519,651 - Pf6N2E2_456 0.19 -1.6
519,857 + Pf6N2E2_456 0.38 +0.7
519,857 + Pf6N2E2_456 0.38 -0.3
519,858 - Pf6N2E2_456 0.38 +0.0
519,858 - Pf6N2E2_456 0.38 -0.1
519,858 - Pf6N2E2_456 0.38 +0.6
519,858 - Pf6N2E2_456 0.38 -0.5
519,858 - Pf6N2E2_456 0.38 -1.4
519,965 + Pf6N2E2_456 0.48 +0.3
519,965 + Pf6N2E2_456 0.48 -0.6
519,980 + Pf6N2E2_456 0.50 -0.1
519,981 - Pf6N2E2_456 0.50 +0.9
520,034 + Pf6N2E2_456 0.55 -1.1
520,034 + Pf6N2E2_456 0.55 -0.8
520,035 - Pf6N2E2_456 0.55 -0.2
520,252 + Pf6N2E2_456 0.75 -1.9
520,253 - Pf6N2E2_456 0.75 +0.5
520,253 - Pf6N2E2_456 0.75 -0.2
520,256 + Pf6N2E2_456 0.75 +0.0
520,256 + Pf6N2E2_456 0.75 -0.4
520,256 + Pf6N2E2_456 0.75 -0.7
520,256 + Pf6N2E2_456 0.75 -2.0
520,256 + Pf6N2E2_456 0.75 -0.7
520,256 + Pf6N2E2_456 0.75 -1.9
520,256 + Pf6N2E2_456 0.75 -0.1
520,257 - Pf6N2E2_456 0.75 -0.8
520,257 - Pf6N2E2_456 0.75 +0.0
520,257 - Pf6N2E2_456 0.75 -0.8
520,257 - Pf6N2E2_456 0.75 +0.3
520,257 - Pf6N2E2_456 0.75 +0.0
520,257 - Pf6N2E2_456 0.75 -1.1
520,520 + -0.6
520,583 - +1.2
520,608 - -1.6
520,608 - -0.7
520,608 - -0.0
520,608 - -1.2
520,608 - +0.3
520,608 - -0.2
520,628 - +1.5
520,628 - -1.0
520,642 - -0.3

Or see this region's nucleotide sequence