Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1760

Experiment: bromate 0.05 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1758 and Pf6N2E2_1759 are separated by 8 nucleotidesPf6N2E2_1759 and Pf6N2E2_1760 are separated by 103 nucleotidesPf6N2E2_1760 and Pf6N2E2_1761 are separated by 421 nucleotides Pf6N2E2_1758 - Transcriptional regulator, MarR family, at 2,077,112 to 2,077,567 _1758 Pf6N2E2_1759 - uncharacterized domain 1, at 2,077,576 to 2,078,187 _1759 Pf6N2E2_1760 - Oxidoreductase, at 2,078,291 to 2,079,295 _1760 Pf6N2E2_1761 - Transcriptional regulator, LysR family, at 2,079,717 to 2,080,400 _1761 Position (kb) 2078 2079 2080Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2077.376 kb on - strand, within Pf6N2E2_1758at 2077.450 kb on - strand, within Pf6N2E2_1758at 2077.558 kb on + strandat 2077.558 kb on + strandat 2077.572 kb on + strandat 2077.867 kb on + strand, within Pf6N2E2_1759at 2077.868 kb on - strand, within Pf6N2E2_1759at 2078.111 kb on - strand, within Pf6N2E2_1759at 2078.261 kb on + strandat 2078.298 kb on - strandat 2078.298 kb on - strandat 2078.417 kb on + strand, within Pf6N2E2_1760at 2078.459 kb on + strand, within Pf6N2E2_1760at 2078.460 kb on - strand, within Pf6N2E2_1760at 2078.537 kb on + strand, within Pf6N2E2_1760at 2078.537 kb on + strand, within Pf6N2E2_1760at 2078.538 kb on - strand, within Pf6N2E2_1760at 2078.584 kb on + strand, within Pf6N2E2_1760at 2078.585 kb on - strand, within Pf6N2E2_1760at 2078.590 kb on + strand, within Pf6N2E2_1760at 2078.741 kb on + strand, within Pf6N2E2_1760at 2078.842 kb on + strand, within Pf6N2E2_1760at 2078.947 kb on + strand, within Pf6N2E2_1760at 2078.947 kb on + strand, within Pf6N2E2_1760at 2078.947 kb on + strand, within Pf6N2E2_1760at 2079.013 kb on + strand, within Pf6N2E2_1760at 2079.025 kb on + strand, within Pf6N2E2_1760at 2079.318 kb on + strandat 2079.332 kb on + strandat 2079.332 kb on + strandat 2079.359 kb on + strandat 2079.360 kb on - strandat 2079.406 kb on + strandat 2079.406 kb on + strandat 2079.406 kb on + strandat 2079.432 kb on + strandat 2079.433 kb on - strandat 2079.616 kb on - strandat 2079.668 kb on + strandat 2079.682 kb on + strandat 2079.682 kb on + strandat 2079.684 kb on + strandat 2079.970 kb on - strand, within Pf6N2E2_1761at 2080.011 kb on - strand, within Pf6N2E2_1761at 2080.011 kb on - strand, within Pf6N2E2_1761at 2080.064 kb on - strand, within Pf6N2E2_1761at 2080.064 kb on - strand, within Pf6N2E2_1761at 2080.072 kb on + strand, within Pf6N2E2_1761at 2080.073 kb on - strand, within Pf6N2E2_1761at 2080.170 kb on - strand, within Pf6N2E2_1761at 2080.213 kb on - strand, within Pf6N2E2_1761

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Per-strain Table

Position Strand Gene LocusTag Fraction bromate 0.05 M
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2,077,376 - Pf6N2E2_1758 0.58 -0.6
2,077,450 - Pf6N2E2_1758 0.74 +2.0
2,077,558 + -0.3
2,077,558 + +0.4
2,077,572 + -0.2
2,077,867 + Pf6N2E2_1759 0.48 -0.1
2,077,868 - Pf6N2E2_1759 0.48 -0.7
2,078,111 - Pf6N2E2_1759 0.87 +0.4
2,078,261 + -0.6
2,078,298 - +0.6
2,078,298 - -1.1
2,078,417 + Pf6N2E2_1760 0.13 +0.3
2,078,459 + Pf6N2E2_1760 0.17 +1.4
2,078,460 - Pf6N2E2_1760 0.17 -2.0
2,078,537 + Pf6N2E2_1760 0.24 -2.0
2,078,537 + Pf6N2E2_1760 0.24 -0.2
2,078,538 - Pf6N2E2_1760 0.25 -1.9
2,078,584 + Pf6N2E2_1760 0.29 +1.3
2,078,585 - Pf6N2E2_1760 0.29 -1.9
2,078,590 + Pf6N2E2_1760 0.30 -2.9
2,078,741 + Pf6N2E2_1760 0.45 -2.4
2,078,842 + Pf6N2E2_1760 0.55 -0.3
2,078,947 + Pf6N2E2_1760 0.65 -0.3
2,078,947 + Pf6N2E2_1760 0.65 -0.7
2,078,947 + Pf6N2E2_1760 0.65 -2.4
2,079,013 + Pf6N2E2_1760 0.72 +3.0
2,079,025 + Pf6N2E2_1760 0.73 -1.6
2,079,318 + -0.7
2,079,332 + +0.1
2,079,332 + -0.3
2,079,359 + +0.8
2,079,360 - +0.2
2,079,406 + -0.0
2,079,406 + +0.8
2,079,406 + -1.0
2,079,432 + +0.4
2,079,433 - +0.4
2,079,616 - +1.0
2,079,668 + +0.4
2,079,682 + +0.1
2,079,682 + -0.2
2,079,684 + -0.4
2,079,970 - Pf6N2E2_1761 0.37 +0.5
2,080,011 - Pf6N2E2_1761 0.43 +0.5
2,080,011 - Pf6N2E2_1761 0.43 -0.3
2,080,064 - Pf6N2E2_1761 0.51 +0.8
2,080,064 - Pf6N2E2_1761 0.51 +0.1
2,080,072 + Pf6N2E2_1761 0.52 -0.2
2,080,073 - Pf6N2E2_1761 0.52 +1.6
2,080,170 - Pf6N2E2_1761 0.66 -0.2
2,080,213 - Pf6N2E2_1761 0.73 +1.5

Or see this region's nucleotide sequence