Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03270 and MMP_RS03275 are separated by 64 nucleotides MMP_RS03275 and MMP_RS03280 are separated by 63 nucleotides MMP_RS03280 and MMP_RS03285 are separated by 117 nucleotides MMP_RS03285 and MMP_RS03290 are separated by 82 nucleotides MMP_RS03290 and MMP_RS03295 are separated by 9 nucleotides
MMP_RS03270: MMP_RS03270 - ADP-ribosylglycohydrolase family protein, at 616,692 to 617,600
_RS03270
MMP_RS03275: MMP_RS03275 - TIGR00266 family protein, at 617,665 to 618,333
_RS03275
MMP_RS03280: MMP_RS03280 - pyridoxamine 5'-phosphate oxidase family protein, at 618,397 to 618,798
_RS03280
MMP_RS03285: MMP_RS03285 - 50S ribosomal protein L14e, at 618,916 to 619,149
_RS03285
MMP_RS03290: MMP_RS03290 - AAA family ATPase, at 619,232 to 619,768
_RS03290
MMP_RS03295: MMP_RS03295 - 50S ribosomal protein L34e, at 619,778 to 620,047
_RS03295
Position (kb) 618
619 Strain fitness (log2 ratio) -1
0
1 at 617.434 kb on - strand, within MMP_RS03270 at 617.472 kb on - strand, within MMP_RS03270 at 617.650 kb on + strand at 617.783 kb on - strand, within MMP_RS03275 at 617.784 kb on + strand, within MMP_RS03275 at 617.853 kb on + strand, within MMP_RS03275 at 617.913 kb on - strand, within MMP_RS03275 at 617.915 kb on - strand, within MMP_RS03275 at 618.232 kb on - strand, within MMP_RS03275 at 618.233 kb on + strand, within MMP_RS03275 at 618.308 kb on + strand at 618.395 kb on + strand at 618.395 kb on + strand at 618.443 kb on - strand, within MMP_RS03280 at 618.482 kb on - strand, within MMP_RS03280 at 618.524 kb on - strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.658 kb on - strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.742 kb on + strand, within MMP_RS03280 at 618.746 kb on + strand, within MMP_RS03280 at 618.753 kb on + strand, within MMP_RS03280 at 618.779 kb on - strand at 618.826 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.842 kb on - strand at 618.937 kb on - strand at 618.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 617,434 - MMP_RS03270 0.82 +0.1 617,472 - MMP_RS03270 0.86 -0.0 617,650 + -0.3 617,783 - MMP_RS03275 0.18 -0.2 617,784 + MMP_RS03275 0.18 -0.1 617,853 + MMP_RS03275 0.28 +0.1 617,913 - MMP_RS03275 0.37 -0.7 617,915 - MMP_RS03275 0.37 -0.0 618,232 - MMP_RS03275 0.85 +0.7 618,233 + MMP_RS03275 0.85 +0.1 618,308 + -0.8 618,395 + -0.6 618,395 + -0.0 618,443 - MMP_RS03280 0.11 -0.0 618,482 - MMP_RS03280 0.21 -0.1 618,524 - MMP_RS03280 0.32 +0.0 618,579 + MMP_RS03280 0.45 +0.1 618,579 + MMP_RS03280 0.45 +0.1 618,658 - MMP_RS03280 0.65 +0.2 618,742 + MMP_RS03280 0.86 +0.6 618,742 + MMP_RS03280 0.86 +0.1 618,746 + MMP_RS03280 0.87 +0.2 618,753 + MMP_RS03280 0.89 +0.0 618,779 - +1.3 618,826 - -0.2 618,842 - -0.0 618,842 - +0.0 618,842 - -0.2 618,937 - -0.6 618,937 - -1.4
Or see this region's nucleotide sequence